rs1124110
A SNP in the GALNT2 gene on chromosome 1. Its most notable genotype is T;T: common in complete genomics
- Gene
- GALNT2
- Location
- Chr 1230,175,226 (GRCh38)
- Highest magnitude
- 0.0Typical
- Tested on
- 23andMe, AncestryDNA, FamilyTreeDNA
- Minor allele frequency
- 17%
Genotypes
Plus strand, as in 23andMe and AncestryDNA files.
SNPedia records rs1124110 on the minus strand: (A;A). Magnitude rates how notable a genotype is from 0 to 10, not how risky it is.
Frequency
Share of each genotype in 11 HapMap populations.
- AverageT;T 68%
- European ancestry (Utah)T;T 81%
- Han Chinese (Beijing)T;T 53%
- Japanese (Tokyo)T;T 50%
- Yoruba (Nigeria)T;T 76%
- African ancestry (Southwest US)T;T 72%
- Chinese (Denver)T;T 59%
- Gujarati IndianT;T 68%
- Luhya (Kenya)T;T 69%
- Mexican ancestry (Los Angeles)T;T 55%
- Maasai (Kenya)T;T 77%
- TuscanT;T 83%
Related
Conditions, medicines and genes
Notes
From SNPedia
Show notes, about 130 words
Split hand syndrome (or split hand and foot syndrome) is a developmental abnormality resulting in malformed or absent fingers and/or toes. There may be additional limb defects, such as absent tibias. Several different chromosomal regions have been implicated in this syndrome, among them * rs1124110 in the GALNT2 gene; the risk allele is G (reported as C by 23andMe) This variation is considered to be an autosomal dominant with low penetrance. In other words, the split hand defect will often skip generations, and most people who carry the risk variant of rs1124110 have normal hands and feet. There are known carriers of two risk alleles of rs1124110 who are normal, although other family members are affected. This pattern of inheritance indicates that more than one gene may be involved.
Source and license
Adapted from rs1124110 on SNPedia, using a snapshot taken October 16, 2026. SNPedia content is shared under CC BY-NC-SA 3.0 US, and this page is shared under the same license.
SNPedia is a community-edited wiki. Its entries can be incomplete, out of date or wrong, and nothing here is a diagnosis or medical advice. Magnitude is a community rating of how interesting a genotype is, not a risk score.