rs12021720
A SNP in the DBT gene on chromosome 1. Its most notable genotype is T;T: rare genotype but harmless
- Gene
- DBT
- Location
- Chr 1100,206,504 (GRCh38)
- Highest magnitude
- 0.1Typical
- Tested on
- 23andMe, AncestryDNA
- Minor allele frequency
- 10%
Genotypes
As shown in 23andMe and AncestryDNA files.
- C;CGoodNo summary available.
- C;TGoodNo summary available.
- T;TMost notableGoodrare genotype but harmless
On SNPedia: (C;C), (C;T), (T;T). Magnitude rates how notable a genotype is from 0 to 10, not how risky it is.
Frequency
Share of each genotype in 11 HapMap populations.
- AverageC;C 80% C;T 18% T;T 2%
- European ancestry (Utah)C;C 81% C;T 18% T;T <1%
- Han Chinese (Beijing)C;C 93% C;T 7% T;T 0%
- Japanese (Tokyo)C;C 98% C;T 2% T;T 0%
- Yoruba (Nigeria)C;C 52% C;T 39% T;T 10%
- African ancestry (Southwest US)C;C 72% C;T 26% T;T 2%
- Chinese (Denver)C;C 95% C;T 6% T;T 0%
- Gujarati IndianC;C 91% C;T 9% T;T 0%
- Luhya (Kenya)C;C 65% C;T 28% T;T 7%
- Mexican ancestry (Los Angeles)C;C 93% C;T 7% T;T 0%
- Maasai (Kenya)C;C 60% C;T 38% T;T 3%
- TuscanC;C 82% C;T 16% T;T 2%
Related
Conditions, medicines and genes
Notes
From SNPedia
Show notes, about 280 words
Two SNPedia users have self reported the (T;T) genotype with no apparent consequences. It was first noted in a patient with documented in omim. A Japanese patient with the intermediate form of maple syrup urine disease 2 showed a compound heterozygote for both * the apparently causative C->G transversion at nucleotide 309 DBT gene (I37M) * this G->A transition in exon 9 (G323S) which with no obvious consequences
C;T
a relatively common variant, which is linked to Maple Syrup Urine Disease, but appears harmless. In 1998 this paper published about a patient with MSUD who had 2 mutations "The third patient was a compound heterozygote for a C to G transversion at nucleotide 309 in exon 4 and a G to A transition at nucleotide 1165 in exon 9, causing an Ile-to-Met substitution at amino acid 37 and a Gly-to-Ser substitution at amino acid 323." It is that second mutation (Gly-to-Ser substitution at amino acid 323 also known as rs12021720) which was found in your data. It isn't clear from the paper if that mutation was somehow the cause of MSUD, influences its progression, or is completely harmless. In more recent years we have some additional information about this mutation, we now know it's frequency in caucasian population. In your report it is mentioned that the (C;T) that you have is found in 15.3% of all caucasians. As a result it is exceedingly unlikely that this directly causes anything as significant as MSUD, however it may still have lesser consequences when combined with other variants. A SNPedia user has now self reported the (T;T) genotype making it very unlikely that this snp has significant consequences.
T;T
Two SNPedia users have reported this genotype with no apparent consequences.
References
Source and license
Adapted from rs12021720 on SNPedia, using a snapshot taken October 16, 2026. SNPedia content is shared under CC BY-NC-SA 3.0 US, and this page is shared under the same license.
SNPedia is a community-edited wiki. Its entries can be incomplete, out of date or wrong, and nothing here is a diagnosis or medical advice. Magnitude is a community rating of how interesting a genotype is, not a risk score.