rs7679

A SNP in the PCIF1 gene on chromosome 20. Its most notable genotype is T;T: common on affy axiom data

Gene
PCIF1
Location
Chr 2045,947,863 (GRCh38)
Highest magnitude
0.0Typical
Tested on
23andMe, AncestryDNA
Minor allele frequency
10%

Genotypes

As shown in 23andMe and AncestryDNA files.

  1. T;TMost notableGoodcommon on affy axiom dataTypical · 0.083% of people

On SNPedia: (T;T). Magnitude rates how notable a genotype is from 0 to 10, not how risky it is.

Frequency

Share of each genotype in 11 HapMap populations.

  • AverageT;T 83%
  • European ancestry (Utah)T;T 69%
  • Han Chinese (Beijing)T;T 95%
  • Japanese (Tokyo)T;T 100%
  • Yoruba (Nigeria)T;T 99%
  • African ancestry (Southwest US)T;T 97%
  • Chinese (Denver)T;T 95%
  • Gujarati IndianT;T 57%
  • Luhya (Kenya)T;T 87%
  • Mexican ancestry (Los Angeles)T;T 71%
  • Maasai (Kenya)T;T 74%
  • TuscanT;T 71%

Conditions, medicines and genes

Notes

From SNPedia

Show notes, about 130 words

per the 23andMe blog, the minor allele of this SNP (C) was associated with decreased HDL cholesterol and increased triglycerides {| border="1" |- !SNP !Rarer allele !LDL !HDL !TG |- | rs6544713 || T || + || || |- | rs2650000 || A || + || || |- | rs471364 || C || || - || |- | rs1800961 || T || || - || |- | rs7679 || C || || - || + |- | rs2967605 || T || || - || |- | rs2409722 || T || || || - |- | rs10903129 || A || - || - || - |- | rs6756629 || A || - || + || - |- | rs12670798 || C || + || + || + |- | rs7395662 || A || - || + || + |- | rs174570 || T || - || - || + |- | rs2271293 || A || - || + || - |- | rs2624265 || C || || || + |- | rs2167079 || T || || + || |- | rs9891572 || T || || + || |- | rs4844614 || T || + || || |- | rs5031002 || G || + || || |- |}

Source and license

Adapted from rs7679 on SNPedia, using a snapshot taken October 16, 2026. SNPedia content is shared under CC BY-NC-SA 3.0 US, and this page is shared under the same license.

SNPedia is a community-edited wiki. Its entries can be incomplete, out of date or wrong, and nothing here is a diagnosis or medical advice. Magnitude is a community rating of how interesting a genotype is, not a risk score.