rs889312
A SNP on chromosome 5. Its most notable genotype is A;C: Very slightly higher risk for breast cancer
- Gene
- None listed
- Location
- Chr 556,736,057 (GRCh38)
- Highest magnitude
- 1.1Minor
- Tested on
- 23andMe, AncestryDNA
- Minor allele frequency
- 39%
Genotypes
As shown in 23andMe and AncestryDNA files.
- A;ANot ratednormal
- A;CMost notableBadVery slightly higher risk for breast cancer
- C;CBadVery slightly higher risk for breast cancer
On SNPedia: (A;A), (A;C), (C;C). Magnitude rates how notable a genotype is from 0 to 10, not how risky it is.
Frequency
Share of each genotype in 4 HapMap populations.
- AverageA;A 34% A;C 49% C;C 17%
- European ancestry (Utah)A;A 48% A;C 45% C;C 8%
- Han Chinese (Beijing)A;A 27% A;C 46% C;C 27%
- Japanese (Tokyo)A;A 14% A;C 64% C;C 23%
- Yoruba (Nigeria)A;A 48% A;C 43% C;C 10%
Related
Conditions, medicines and genes
Notes
From SNPedia
Show notes, about 180 words
rs889312 is a SNP near the MAP3K1 gene. rs889312 was one of the four strongest associating SNPs found in a genome-wide association study of over 4,000 breast cancer samples. . From a DeCode user report, it appears that the risk allele is C; this A;A individual reportedly has 0.93x risk of breast cancer. In a study of 1,267 breast cancer patients, rs889312 heterozygotes and minor allele homozygotes were less likely to be lymph node positive at breast cancer diagnosis (P = 0.044) relative to major allele homozygote carriers. A meta-analysis including 26,015 cases and 33,962 controls concludes that the rs889312(C) allele is clearly a significant - but quite weak - contributor to increased risk for breast cancer. breast cancer *rs2981582, rs3803662, and rs889312) showed weak but significant associations with ER-negative disease, the strongest association being for rs3803662 in TNRC9 (1.14 (1.09-1.21)) Relevant data indicate that SNP rs889312 in MAP3K1 is correlated with BC susceptibility only in BRCA2 mutation carriers, but is not associated with an increased risk in BRCA1 carriers.
Source and license
Adapted from rs889312 on SNPedia, using a snapshot taken October 16, 2026. SNPedia content is shared under CC BY-NC-SA 3.0 US, and this page is shared under the same license.
SNPedia is a community-edited wiki. Its entries can be incomplete, out of date or wrong, and nothing here is a diagnosis or medical advice. Magnitude is a community rating of how interesting a genotype is, not a risk score.