rs9309413
A SNP in the LOC102724389 gene on chromosome 2. Its most notable genotype is C;C: lowest sphingomyelin values
- Gene
- LOC102724389
- Location
- Chr 268,343,640 (GRCh38)
- Highest magnitude
- 0.0Typical
- Tested on
- 23andMe, AncestryDNA
- Minor allele frequency
- 37%
Genotypes
As shown in 23andMe and AncestryDNA files.
- C;CMost notableNot ratedlowest sphingomyelin values
- C;GNot ratedintermediate sphingomyelin values
- G;GNot ratedhighest sphingomyelin values
On SNPedia: (C;C), (C;G), (G;G). Magnitude rates how notable a genotype is from 0 to 10, not how risky it is.
Frequency
Share of each genotype in 11 HapMap populations.
- AverageC;C 22% C;G 36% G;G 43%
- European ancestry (Utah)C;C 13% C;G 52% G;G 35%
- Han Chinese (Beijing)C;C <1% C;G 8% G;G 91%
- Japanese (Tokyo)C;C 0% C;G 11% G;G 89%
- Yoruba (Nigeria)C;C 48% C;G 42% G;G 10%
- African ancestry (Southwest US)C;C 47% C;G 39% G;G 14%
- Chinese (Denver)C;C 2% C;G 20% G;G 78%
- Gujarati IndianC;C 19% C;G 52% G;G 30%
- Luhya (Kenya)C;C 29% C;G 52% G;G 19%
- Mexican ancestry (Los Angeles)C;C 21% C;G 31% G;G 48%
- Maasai (Kenya)C;C 35% C;G 46% G;G 19%
- TuscanC;C 23% C;G 40% G;G 37%
Notes
From SNPedia
Notes
rs9309413 is a SNP located near the PLEK gene. A study of metabolite concentrations in the blood of 284 adult males from Southern Germany determined that several SNPs were associated either directly with a metabolite range or with a ratio of metabolites. The rarer rs9309413(G) allele was associated with increased sphingomyelin (SM) values. 320px|thumb|left|
Source and license
Adapted from rs9309413 on SNPedia, using a snapshot taken October 16, 2026. SNPedia content is shared under CC BY-NC-SA 3.0 US, and this page is shared under the same license.
SNPedia is a community-edited wiki. Its entries can be incomplete, out of date or wrong, and nothing here is a diagnosis or medical advice. Magnitude is a community rating of how interesting a genotype is, not a risk score.