rs10494366

A SNP in the NOS1AP gene on chromosome 1. Its most notable genotype is T;T: Shorter QT interval

Gene
NOS1AP
Location
Chr 1162,115,895 (GRCh38)
Highest magnitude
2.0Worth knowing
Tested on
23andMe, AncestryDNA
Minor allele frequency
48%

Genotypes

As shown in 23andMe and AncestryDNA files.

  1. G;GNot ratedLong QT intervalTypical · 0.038% of people
  2. G;TNot ratedaverage QT intervalTypical · 0.042% of people
  3. T;TMost notableNot ratedShorter QT intervalWorth knowing · 2.020% of people

On SNPedia: (G;G), (G;T), (T;T). Magnitude rates how notable a genotype is from 0 to 10, not how risky it is.

Frequency

Share of each genotype in 11 HapMap populations.

  • AverageG;G 38% G;T 42% T;T 20%
  • European ancestry (Utah)G;G 11% G;T 49% T;T 41%
  • Han Chinese (Beijing)G;G 47% G;T 39% T;T 15%
  • Japanese (Tokyo)G;G 47% G;T 43% T;T 10%
  • Yoruba (Nigeria)G;G 47% G;T 46% T;T 8%
  • African ancestry (Southwest US)G;G 40% G;T 47% T;T 12%
  • Chinese (Denver)G;G 46% G;T 44% T;T 10%
  • Gujarati IndianG;G 58% G;T 33% T;T 9%
  • Luhya (Kenya)G;G 62% G;T 29% T;T 9%
  • Mexican ancestry (Los Angeles)G;G 17% G;T 40% T;T 43%
  • Maasai (Kenya)G;G 37% G;T 47% T;T 17%
  • TuscanG;G 10% G;T 44% T;T 46%

Notes

From SNPedia

Show notes, about 320 words

rs10494366, a SNP in the NOS1AP gene encoding the nitric oxide synthase I adaptor protein, accounts for some of the variation seen in abnormal heart rhythms, in particular, the QT interval. Based on studies totaling ~4,000 individuals of Caucasian ancestry, homozygotes for one allele have shorter QT intervals, while homozygotes for the other allele have a longer QT interval. A follow-up study determined that one rs10494366(G) allele was associated with a 3.8-ms (CI: 3.0 - 4.6ms, p=7.8x10(-20)) increase in QT interval duration, and two (G) alleles had twice that increase. No increase in risk for sudden death due to a cardiac problem was associated with this SNP, though. rs10494366 minor homozygotes had a 9.3 msec longer QT interval compared to major homozygotes (p=5.7x10(-5)); rs10918594 minor homozygotes had a 12.5 msec longer QT interval compared to major homozygotes (p=1.5x10(-6)). Restricting analyses to the diabetic EAs strengthened the effect despite the reduction in sample size (11.3 msec difference, p=5.1x10(-5); 13.9 msec difference, p=1.6x10(-6), respectively). Patients with rs10494366(G;T) or (G;G) genotypes have an increased mortality risk (hazard ratio 2.8) compared to (T;T) genotypes upon treatment with sulfonylurea antidiabetic drugs. Glibenclamide is less effective in reducing glucose levels and mortality rates were higher compared with glibenclamide users with the (T;T) genotype. However, in tolbutamide and glimepiride users, the (G;T) and (G;G) genotypes were associated with a reduced mortality rate. rs10494366, rs4657139 and rs16847548 were significantly associated with adjusted QT interval in whites. relative hazard of SCD associated with each C allele at rs16847548 was 1.31. rs12567209 was also independently associated with SCD in whites (relative hazard 0.57, 95% confidence interval 0.39 to 0.83, P=0.003). No significant associations observed in blacks.

Source and license

Adapted from rs10494366 on SNPedia, using a snapshot taken October 16, 2026. SNPedia content is shared under CC BY-NC-SA 3.0 US, and this page is shared under the same license.

SNPedia is a community-edited wiki. Its entries can be incomplete, out of date or wrong, and nothing here is a diagnosis or medical advice. Magnitude is a community rating of how interesting a genotype is, not a risk score.