rs12053868
A SNP in the IL1RAP gene on chromosome 3. Its most notable genotype is A;G: possibly faster amyloid accumulation in older (70+) adults
- Gene
- IL1RAP
- Location
- Chr 3190,582,215 (GRCh38)
- Highest magnitude
- 2.0Worth knowing
- Tested on
- 23andMe, AncestryDNA, FamilyTreeDNA
Genotypes
As shown in 23andMe and AncestryDNA files.
- A;AGoodcommon/normal
- A;GMost notableBadpossibly faster amyloid accumulation in older (70+) adults
- G;GBadpossibly faster amyloid accumulation in older (70+) adults
On SNPedia: (A;A), (A;G), (G;G). Magnitude rates how notable a genotype is from 0 to 10, not how risky it is.
Frequency
Share of each genotype in 9 HapMap populations.
- AverageA;A 82% A;G 16% G;G 1%
- European ancestry (Utah)A;A 79% A;G 20% G;G <1%
- Han Chinese (Beijing)A;A 69% A;G 28% G;G 3%
- Japanese (Tokyo)A;A 76% A;G 22% G;G 2%
- Yoruba (Nigeria)A;A 100% A;G 0% G;G 0%
- African ancestry (Southwest US)A;A 97% A;G 4% G;G 0%
- Chinese (Denver)A;A 71% A;G 25% G;G 5%
- Gujarati IndianA;A 82% A;G 16% G;G 2%
- Mexican ancestry (Los Angeles)A;A 88% A;G 12% G;G 0%
- TuscanA;A 78% A;G 21% G;G 1%
Related
Conditions, medicines and genes
Notes
From SNPedia
Show notes, about 290 words
Carriers of the G allele of rs12053868 accumulated more amyloid as measured by PET scanning and were associated with accelerated cognitive decline in a GWAS of older adults (70+ years of age) compared to non-carriers. This result was confirmed in independent cohorts. Additional findings included: * No significant interactions were identified between rs12053868 and APOE ε4 status, baseline diagnosis, or age or gender; * The association of rs12053868 was genome-wide significant under both additive (P = 1.38 × 10−9) and dominant (P = 5.26 × 10−9) genetic models; * Controlling for age, gender, and TSPO rs6971 genotype, rs12053868(G) was associated with lower cortical microglial activation (P = 0.031); * Using structural MRI in a subset of the GWAS sample (n = 358), rs12053868(G) carriers exhibited greater declines in temporal cortex thickness compared to non-carriers (P = 0.035). This effect remained significant - but just barely - (P = 0.042) after the inclusion of diagnosis as an independent predictor variable. * Of 269 GWAS participants diagnosed with MCI at baseline who had diagnosis information at 2-year follow-up (incl. 42 who progressed to Alzheimer's Disease and 227 who did not), rs12053868(G) carriers were more likely to convert to Alzheimer’s disease within the follow-up period than non-carriers (P = 0.025, odds ratio 2.32, CI:1.11–4.87); * A meta-analysis of 579 participants from three independent cohorts showed that rs12053868(G) was associated with faster 2-year decline in verbal episodic memory performance (P = 7.72 × 10−4), with each copy of the G allele adding approximately one-quarter of a standard deviation to the rate of decline.
A;G
see discussion at rs12053868
G;G
see discussion at rs12053868
Source and license
Adapted from rs12053868 on SNPedia, using a snapshot taken October 16, 2026. SNPedia content is shared under CC BY-NC-SA 3.0 US, and this page is shared under the same license.
SNPedia is a community-edited wiki. Its entries can be incomplete, out of date or wrong, and nothing here is a diagnosis or medical advice. Magnitude is a community rating of how interesting a genotype is, not a risk score.