rs17215500

A SNP in the KCNQ1 gene on chromosome 11. Its most notable genotype is T;T: LQT1 form of Long QT syndrome; Jervell and Lange-Nielsen syndrome

Gene
KCNQ1
Location
Chr 112,768,881 (GRCh38)
Highest magnitude
7.5Very important
Tested on
Not on consumer chips

Genotypes

As shown in 23andMe and AncestryDNA files.

  1. C;CGoodcommon in clinvarTypical · 0.0
  2. C;TBadLQT1 form of Long QT syndromeVery important · 5.0
  3. T;TMost notableBadLQT1 form of Long QT syndrome; Jervell and Lange-Nielsen syndromeVery important · 7.5

On SNPedia: (C;C), (C;T), (T;T). Magnitude rates how notable a genotype is from 0 to 10, not how risky it is.

Notes

From SNPedia

Show notes, about 170 words

rs17215500 represents two variants in the KCNQ1 gene on chromosome 11; a c.1552C>T change (also known as p.Arg518Ter or R518X), and a c.1552C>G change (also known as p.Arg518Gly or R518G). The c.1552C>G variant is reported as a variant of unknown significance in ClinVar; although it is very rare and has only been reported in several individuals with Long QT syndrome type 1, the available evidence is not considered sufficient to conclude if it is disease-causing. The c.1552C>T variant, on the other hand, is considered pathogenic for Long QT syndrome as either a dominant or perhaps recessive mutation, and, for Jervell and Lange-Nielsen syndrome, a form of Long QT syndrome that is inherited recessively and associated with hearing loss from birth. In the absence of other pathogenic KCNQ1 gene mutations, the c.1552C>T mutation results in variable expressivity and may have reduced penetrance, depending on other genetic and environmental factors according to ClinVar. 23andMe name for the c.1552C>T variant: i3000206

Source and license

Adapted from rs17215500 on SNPedia, using a snapshot taken October 16, 2026. SNPedia content is shared under CC BY-NC-SA 3.0 US, and this page is shared under the same license.

SNPedia is a community-edited wiki. Its entries can be incomplete, out of date or wrong, and nothing here is a diagnosis or medical advice. Magnitude is a community rating of how interesting a genotype is, not a risk score.