rs1799945
A SNP in the LOC108783645 gene on chromosome 6. Its most notable genotype is G;G: Two copies of H63D, likely affected by mild form of hemochromatosis
- Gene
- LOC108783645
- Location
- Chr 626,090,951 (GRCh38)
- Highest magnitude
- 4.0Very important
- Tested on
- 23andMe, AncestryDNA
- Minor allele frequency
- 8%
Genotypes
As shown in 23andMe and AncestryDNA files.
- C;CGoodNot a H63D hemochromatosis carrier.
- C;GBadOne copy of H63D, carrier of hemochromatosis, likely unaffected unless also C282Y carrier.
- G;GMost notableBadTwo copies of H63D, likely affected by mild form of hemochromatosis
On SNPedia: (C;C), (C;G), (G;G). Magnitude rates how notable a genotype is from 0 to 10, not how risky it is.
Frequency
Share of each genotype in 4 HapMap populations.
- AverageC;C 83% C;G 17% G;G 0%
- European ancestry (Utah)C;C 64% C;G 36% G;G 0%
- Han Chinese (Beijing)C;C 75% C;G 25% G;G 0%
- Japanese (Tokyo)C;C 92% C;G 8% G;G 0%
- Yoruba (Nigeria)C;C 100% C;G 0% G;G 0%
Related
Conditions, medicines and genes
Other LOC108783645 SNPs
- rs1800562A;ATwo copies of C282Y, likely affected by hemochromatosis which may be serious if male or post-menopausal.Very important
- rs28934595A;CCarrier of a hemochromatosis variantImportant
- rs28934596C;TCarrier of a hemochromatosis variantImportant
- rs28934597C;GCarrier of a hemochromatosis variantImportant
- rs111033563A;CCarrier of a hemochromatosis variantImportant
- rs146519482G;TCarrier of a hemochromatosis variantImportant
- rs797045145A;GCarrier of a hemochromatosis variantImportant
- rs1800730T;Taffected by a mild form of hemochromatosisWorth knowing
Notes
From SNPedia
Show notes, about 850 words
rs1799945, also known as H63D or His63Asp, represents a SNP that accounts for a mild form of hereditary hemochromatosis (HH), an iron overload condition in which mutations of certain genes involved in iron metabolism disrupt the body’s ability to regulate uptake of iron, causing increased intestinal iron absorption. The most common form is caused by mutations in the HFE gene, which are inherited recessively. The gene for HH is closely linked to the HLA-A3 locus on the short arm of chromosome 6 . In 1996, HFE, a gene for HH, was found to have two missense mutations . A mutation at amino acid 282 (C282Y) was found to be homozygous in 83 percent of patients with HH. This is a point mutation from guanine to adenine, resulting in a missense mutation from cysteine to tyrosine. Such mutations are commonly found in people with European ancestry, and is more rare in Asian and African populations. Among individuals of northern European descent, hereditary hemochromatosis is the most common inherited identified genetic disorder. However, penetrance differs between different populations. ==HFE Gene== The HFE gene encodes the human hemochromatosis protein, which is located on the short arm of chromosome 6 at 6p21.3. The protein regulates iron absorption by regulating the interaction of the transferrin receptor with transferrin. The HFE protein interacts with TFRC, the transferrin receptor protein 1, so its primary mode of action is through regulation of the iron storage hormone hepcidin. ====Mutations in the HFE Gene==== The three most common HH-causing mutations in the HFE gene (chromosome 6p21.3) are C282Y (A at rs1800562 instead of G), H63D (G at rs1799945 instead of C), and S65C (T at i3002468 instead of A). At least 17 other mutations in the HFE gene have been linked to HH. 60-90% of people with HH have two copies of the C282Y mutation. The H63D mutation is also quite common—about 20% of people carry a copy of the mutation, and about 3% have two copies. This mutation is not as severe as the C282Y mutation, and only causes symptoms when someone has both the H63D and the C282Y mutations. Even then, only a small fraction of people with one copy of each mutation actually exhibit evidence of iron overload. Additionally, those who have two copies of H63D do not exhibit any symptoms and are not at risk for iron overload. The S65C mutation is less common, and will also only cause symptoms if in combination with C282Y. For both H63D/C282Y and S65C/C282Y single mutation individuals, symptoms are usually mild if they develop at all. ==Influence on Iron Levels== HH has four main pathophysiological mechanisms : the increased absorption of dietary iron in the upper intestine, 2) decreased expression of hepcidin, 3) altered function of the HFE protein, and 4) tissue injury and fibrogenesis induced by iron. Since the HFE gene encodes for proteins that affect pathways centered around liver hepcidin synthesis, this mechanism will be further explained in more detail. The HFE gene regulates the liver protein hepcidin, which is considered to be the principal iron-regulatory hormone. Levels of hepcidin increase when iron levels increase in the blood, preventing intestinal cells and macrophages from releasing iron into the bloodstream. When iron builds up in the cells, signals are produced to reduce the iron absorption from food. Hepcidin levels decrease when the body needs more iron. Mutations in the HFE gene such as C282Y and H63D decrease hepcidin levels, causing intestinal cells to think more iron is needed. Thus, more iron is absorbed. Concentrations of hepcidin in the urine negatively correlate with the severity of HH. ==Symptoms of Hereditary Hemochromatosis== The symptoms of HH depend on the person’s mutation as well as their sex and diet. The older a person, the more likely iron has accumulated in the body over time. Typically, complications may develop later in life between the ages of 40 and 60 in men and in post-menopausal women. If symptoms do develop, these are typically seen in the liver, skin, pancreas, heart, joints, and testes. At first, one may feel symptoms such as joint pain and stiffness, fatigue, abdominal pain, and weight loss. Later symptoms may lead to more serious conditions such as cirrhosis of the liver, cancer, liver failure, diabetes, congestive heart failure, and arthritis. ====Symptomatic Findings in Patients with HH==== *Liver- hepatomegaly, splenomegaly, liver failure *Joints- arthritis, swelling, chondrocalcinosis *Heart- dilated cardiomyopathy, CHF *Skin- increased pigmentation *Endocrine- testicular atrophy, hypogonadism *Hypothyroidism
C;G
You are a carrier for rs1799945(G) H63D Hereditary hemochromatosis. You are unlikely to be affected unless also a carrier of rs1800562(A) C282Y, but others in your family may be. This is a treatable condition.
G;G
You would be expected to experience Hereditary hemochromatosis based on your rs1799945(G;G) H63D status. Without concurrent C282Y rs1800562 (A;G) or (A;A), it is unlikely that you will experience symptoms. This is a treatable condition.
Source and license
Adapted from rs1799945 on SNPedia, using a snapshot taken October 16, 2026. SNPedia content is shared under CC BY-NC-SA 3.0 US, and this page is shared under the same license.
SNPedia is a community-edited wiki. Its entries can be incomplete, out of date or wrong, and nothing here is a diagnosis or medical advice. Magnitude is a community rating of how interesting a genotype is, not a risk score.