rs2188962
A SNP in the IBD5 gene on chromosome 5. Its most notable genotype is C;C: common./normal
- Gene
- IBD5
- Location
- Chr 5132,435,113 (GRCh38)
- Highest magnitude
- 0.0Typical
- Tested on
- 23andMe, AncestryDNA
- Minor allele frequency
- 19%
Genotypes
As shown in 23andMe and AncestryDNA files.
On SNPedia: (C;C). Magnitude rates how notable a genotype is from 0 to 10, not how risky it is.
Frequency
Share of each genotype in 11 HapMap populations.
- AverageC;C 79%
- European ancestry (Utah)C;C 30%
- Han Chinese (Beijing)C;C 99%
- Japanese (Tokyo)C;C 100%
- Yoruba (Nigeria)C;C 99%
- African ancestry (Southwest US)C;C 77%
- Chinese (Denver)C;C 97%
- Gujarati IndianC;C 81%
- Luhya (Kenya)C;C 96%
- Mexican ancestry (Los Angeles)C;C 52%
- Maasai (Kenya)C;C 94%
- TuscanC;C 42%
Related
Conditions, medicines and genes
Notes
From SNPedia
Notes
Strategies and issues in the detection of pathway enrichment in genome-wide association studies. Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions. Association of novel genetic Loci with circulating fibrinogen levels: a genome-wide association study in 6 population-based cohorts. Candidate causal regulatory effects by integration of expression QTLs with complex trait genetic associations. An investigation of genome-wide studies reported susceptibility loci for ulcerative colitis shows limited replication in north Indians.
Source and license
Adapted from rs2188962 on SNPedia, using a snapshot taken October 16, 2026. SNPedia content is shared under CC BY-NC-SA 3.0 US, and this page is shared under the same license.
SNPedia is a community-edited wiki. Its entries can be incomplete, out of date or wrong, and nothing here is a diagnosis or medical advice. Magnitude is a community rating of how interesting a genotype is, not a risk score.