rs5743708
A SNP in the TLR2 gene on chromosome 4. Its most notable genotype is A;A: 6x increased risk of tuberculosis
- Gene
- TLR2
- Location
- Chr 4153,705,165 (GRCh38)
- Highest magnitude
- 3.0Important
- Tested on
- 23andMe, AncestryDNA
- Minor allele frequency
- 1%
Genotypes
As shown in 23andMe and AncestryDNA files.
- A;AMost notableBad6x increased risk of tuberculosis
- A;GNot ratedlower risk for Lyme; 1.6x higher risk of tuberculosis
- G;GGoodnormal
On SNPedia: (A;A), (A;G), (G;G). Magnitude rates how notable a genotype is from 0 to 10, not how risky it is.
Frequency
Share of each genotype in 4 HapMap populations.
- AverageA;A 0% A;G 2% G;G 98%
- European ancestry (Utah)A;A 0% A;G 10% G;G 91%
- Han Chinese (Beijing)A;A 0% A;G 0% G;G 100%
- Japanese (Tokyo)A;A 0% A;G 0% G;G 100%
- Yoruba (Nigeria)A;A 0% A;G 0% G;G 100%
Related
Conditions, medicines and genes
Notes
From SNPedia
Show notes, about 430 words
This SNP affects the risk of developing tuberculosis. erj.ersjournals.com The AA genotype was found to be more significantly associated with tuberculosis. Allele frequencies for guanine (G) and A were found to be 0.95 and 0.05 in the control group and 0.86 and 0.14 in the TB patient group, respectively. The risk of developing [tuberculosis] was increased 6.04- and 1.60-fold for carriers of the AA and GA genotypes, respectively. The variant of rs5743708 known as Arg753Gln or R753Q appears to protect against Lyme disease. Linked to preterm birth rs4696480 (T-16934A and Arg753Gln) and rs5743708) (Thr399Ile) earlier birth for infants carrying (-16934TA/AA and 753ArgGln/GlnGln) Genetic polymorphisms and susceptibility to lung disease. Lemierre's syndrome and genetic polymorphisms: a case report. Linkage between Toll-like receptor (TLR) 2 promotor and intron polymorphisms: functional effects and relevance to sarcoidosis. Genetic variation and haplotype structures of innate immunity genes in eastern India. Toll-like receptor 2 variants are associated with acute reactive arthritis. A pooled investigation of Toll-like receptor gene variants and risk of non-Hodgkin lymphoma. No evidence of major effects in several Toll-like receptor gene polymorphisms in rheumatoid arthritis. Toll-like receptor polymorphisms and susceptibility to urinary tract infections in adult women. Genetic variation of the human urinary tract innate immune response and asymptomatic bacteriuria in women. Polymorphisms in IL-1beta, vitamin D receptor Fok1, and Toll-like receptor 2 are associated with extrapulmonary tuberculosis. Role of polymorphic variants as genetic modulators of infection in neonatal sepsis. Toll-like receptor (TLR) and nucleosome-binding oligomerization domain (NOD) gene polymorphisms and endometrial cancer risk. Inflammatory mediators gene polymorphisms in preeclampsia. Toll-like receptor (TLR) 2 promoter and intron 2 polymorphisms are associated with increased risk for spontaneous bacterial peritonitis in liver cirrhosis. The toll-like receptor 2 (TLR2) -196 to -174 del/ins polymorphism affects viral loads and susceptibility to hepatocellular carcinoma in chronic hepatitis C. Further evidence for the relevance of TLR2 gene variants in spontaneous bacterial peritonitis.
A;A
6x increased risk of tuberculosis
A;G
Good news and bad news: this genotype is reported to exhibit lower susceptibility to acquiring Lyme disease, including late-stage Lyme disease, but it is also associated with a 1.6x increased risk for acquiring tuberculosis.
Source and license
Adapted from rs5743708 on SNPedia, using a snapshot taken October 16, 2026. SNPedia content is shared under CC BY-NC-SA 3.0 US, and this page is shared under the same license.
SNPedia is a community-edited wiki. Its entries can be incomplete, out of date or wrong, and nothing here is a diagnosis or medical advice. Magnitude is a community rating of how interesting a genotype is, not a risk score.