rs73969684

A SNP in the SCN9A gene on chromosome 2. Its most notable genotype is C;T: Possible pain-related mutation, but, may be benign

Gene
SCN9A
Location
Chr 2166,305,834 (GRCh38)
Highest magnitude
3.0Important
Tested on
AncestryDNA

Genotypes

As shown in 23andMe and AncestryDNA files.

  1. C;CGoodcommon in clinvarTypical · 0.0
  2. C;TMost notableNot ratedPossible pain-related mutation, but, may be benignImportant · 3.0

On SNPedia: (C;C), (C;T). Magnitude rates how notable a genotype is from 0 to 10, not how risky it is.

Notes

From SNPedia

Show notes, about 120 words

rs73969684, also known as c.554G>A, p.Arg185His and R185H, represents a rare variant in the SCN9A gene on chromosome 2. The minor allele is found at a frequency of around 0.003 (~1 in 300). The significance of the minor allele is unclear. Mutations in the SCN9A gene are known to cause small fiber neuropathy and paroxysmal extreme pain disorder (often associated with yawning), but this particular mutation, rs73969684(T) - as indicated in dbSNP orientation - is reported as likely to be benign by one submitter to ClinVar. However, three publications describe several patients, most of whom are children, with this mutation and pain-related disorders.,,

C;T

Significance is unclear; see discussion at rs73969684

Source and license

Adapted from rs73969684 on SNPedia, using a snapshot taken October 16, 2026. SNPedia content is shared under CC BY-NC-SA 3.0 US, and this page is shared under the same license.

SNPedia is a community-edited wiki. Its entries can be incomplete, out of date or wrong, and nothing here is a diagnosis or medical advice. Magnitude is a community rating of how interesting a genotype is, not a risk score.