rs2251746

A SNP in the FCER1A gene on chromosome 1. Its most notable genotype is C;C: lowest IgE levels

Gene
FCER1A
Location
Chr 1159,302,270 (GRCh38)
Highest magnitude
0.0Typical
Tested on
23andMe, AncestryDNA
Minor allele frequency
15%

Genotypes

As shown in 23andMe and AncestryDNA files.

  1. C;CMost notableNot ratedlowest IgE levelsTypical · 0.03% of people
  2. C;TNot ratedlower IgE levelsTypical · 0.019% of people
  3. T;TNot ratednormal but highest IgE levelsTypical · 0.078% of people

On SNPedia: (C;C), (C;T), (T;T). Magnitude rates how notable a genotype is from 0 to 10, not how risky it is.

Frequency

Share of each genotype in 11 HapMap populations.

  • AverageC;C 3% C;T 19% T;T 78%
  • European ancestry (Utah)C;C 5% C;T 45% T;T 50%
  • Han Chinese (Beijing)C;C 0% C;T 7% T;T 93%
  • Japanese (Tokyo)C;C 0% C;T 9% T;T 91%
  • Yoruba (Nigeria)C;C 0% C;T 6% T;T 94%
  • African ancestry (Southwest US)C;C 0% C;T 19% T;T 81%
  • Chinese (Denver)C;C 0% C;T 7% T;T 93%
  • Gujarati IndianC;C 13% C;T 26% T;T 61%
  • Luhya (Kenya)C;C 0% C;T 11% T;T 89%
  • Mexican ancestry (Los Angeles)C;C 2% C;T 16% T;T 83%
  • Maasai (Kenya)C;C 3% C;T 31% T;T 67%
  • TuscanC;C 7% C;T 35% T;T 58%

Conditions, medicines and genes

Notes

From SNPedia

Show notes, about 200 words

rs2251746 is a SNP in the gene encoding the alpha chain of the high affinity receptor for IgE (FCER1A) on chromosome 1q23. High levels of serum IgE are associated with allergies, and are mediators of autoimmune diseases. An examination of over 11,000 Germans led to the conclusion that rs2251746 (and one other FCER1A SNP, the tightly linked rs2427837) were strongly associated with high levels of serum IgE. The more common (T) allele was associated with higher serum IgE, and the effect appeared to be additive. Therefore, homozygous rs2251746(C;C) individuals may be at lower risk for atopic eczema and asthma than carriers of one or two (T) alleles. In Japanese patients, rs2251746 may be a poor predictor, and the neighboring rs2427827 may be more appropriate. Common variants in FCER1A influence total serum IgE levels from cord blood up to six years of life. Potential etiologic and functional implications of genome-wide association loci for human diseases and traits. FcepsilonRIalpha gene (FCER1A) promoter polymorphisms and total serum IgE levels in Japanese atopic dermatitis patients. Candidate causal regulatory effects by integration of expression QTLs with complex trait genetic associations.

Source and license

Adapted from rs2251746 on SNPedia, using a snapshot taken October 16, 2026. SNPedia content is shared under CC BY-NC-SA 3.0 US, and this page is shared under the same license.

SNPedia is a community-edited wiki. Its entries can be incomplete, out of date or wrong, and nothing here is a diagnosis or medical advice. Magnitude is a community rating of how interesting a genotype is, not a risk score.