rs3813929
A SNP in the HTR2C gene on chromosome X. Its most notable genotype is C;C: possible weight gain if taking olanzapine
- Gene
- HTR2C
- Location
- Chr X114,584,047 (GRCh38)
- Highest magnitude
- 0.0Typical
- Tested on
- 23andMe, AncestryDNA
- Minor allele frequency
- 12%
Genotypes
As shown in 23andMe and AncestryDNA files.
On SNPedia: (C;C), (C;T), (T;T). Magnitude rates how notable a genotype is from 0 to 10, not how risky it is.
Frequency
Share of each genotype in 7 HapMap populations.
- AverageC;C 90% C;T 5% T;T 5%
- Han Chinese (Beijing)C;C 82% C;T 7% T;T 11%
- Japanese (Tokyo)C;C 86% C;T 9% T;T 5%
- Yoruba (Nigeria)C;C 100% C;T 0% T;T 0%
- African ancestry (Southwest US)C;C 96% C;T 2% T;T 2%
- Luhya (Kenya)C;C 94% C;T 3% T;T 4%
- Maasai (Kenya)C;C 91% C;T 5% T;T 4%
- TuscanC;C 82% C;T 10% T;T 8%
Related
Conditions, medicines and genes
Notes
From SNPedia
Show notes, about 300 words
rs3813929, also known as -759C/T, is a SNP in the 5-hydroxytryptamine (serotonin) receptor 2C HTR2C gene. A study of 107 patients with schizophrenia being treated with olanzapine reported a protective effect against weight-gain from the (T) allele of this SNP; zero patients (of 28) with a rs3813929(T) allele had a body mass index increase of >=10% (p=0.002), whereas (C;C) homozygotes did. This effect may also involve nearby SNP rs518147. T allele showed borderline significant association with higher BMI and incidence of lifetime major depressive disorder among 4978 persons from the European Prospective Investigation into Cancer (EPIC)-Norfolk study, however, only the association with BMI remained borderline significant within the full EPIC-Norfolk cohort (20,981 persons) The association between HTR2C polymorphisms and obesity in psychiatric patients using antipsychotics: a cross-sectional study. Association of the HTR2C gene and antipsychotic induced weight gain: a meta-analysis. The association between HTR2C gene polymorphisms and the metabolic syndrome in patients with schizophrenia. Multivariate permutation analysis associates multiple polymorphisms with subphenotypes of major depression. Focus on HTR2C: A possible suggestion for genetic studies of complex disorders. HTR2C gene polymorphisms and the metabolic syndrome in patients with schizophrenia: a replication study. Cohort profile: risk patterns and processes for psychopathology emerging during adolescence: the ROOTS project. Association of polymorphisms of the serotonergic system with smoking initiation in Caucasians. Pharmacogenetics and antipsychotics: therapeutic efficacy and side effects prediction. Functional consequences of two HTR2C polymorphisms associated with antipsychotic-induced weight gain.
Source and license
Adapted from rs3813929 on SNPedia, using a snapshot taken October 16, 2026. SNPedia content is shared under CC BY-NC-SA 3.0 US, and this page is shared under the same license.
SNPedia is a community-edited wiki. Its entries can be incomplete, out of date or wrong, and nothing here is a diagnosis or medical advice. Magnitude is a community rating of how interesting a genotype is, not a risk score.