rs6318
A SNP in the HTR2C gene on chromosome X. Its most notable genotype is C;C: 1.4x increased risk for cardiac events in patients; apparently stress (cortisol) related
- Gene
- HTR2C
- Location
- Chr X114,731,326 (GRCh38)
- Highest magnitude
- 2.5Worth knowing
- Tested on
- 23andMe, AncestryDNA
- Minor allele frequency
- 17%
Genotypes
As shown in 23andMe and AncestryDNA files.
- C;CMost notableBad1.4x increased risk for cardiac events in patients; apparently stress (cortisol) related
- C;GNot ratedFemale only, since on X ch; appears to mostly be = to common (G;G) genotype
- G;GGoodcommon in clinvar
On SNPedia: (C;C), (C;G), (G;G). Magnitude rates how notable a genotype is from 0 to 10, not how risky it is.
Frequency
Share of each genotype in 4 HapMap populations.
- AverageC;C 12% C;G 12% G;G 76%
- European ancestry (Utah)C;C 9% C;G 14% G;G 77%
- Han Chinese (Beijing)C;C 2% C;G 2% G;G 96%
- Japanese (Tokyo)C;C 5% C;G 2% G;G 93%
- Yoruba (Nigeria)C;C 33% C;G 30% G;G 37%
Related
Conditions, medicines and genes
Other HTR2C SNPs
Genosets
Genosets combine several genotypes. Twofold checks them in your report.
Notes
From SNPedia
Show notes, about 480 words
rs6318 (Cys23Ser / C23S or 68G>C / G68C) is a SNP within the serotonin 2C receptor HTR2C gene located on the X chromosome. Since it is located on the X chromosome, males will be hemizygous and either (C;-) or (G;-), whereas females will either homozygous (C;C) or (G;G) or heterozygous (C;G). In most of the studies cited below, heterozyous (C;G) females were roughly statistically equivalent to females carrying the common non-risk (G;G) genotype. One relatively large (4,000 men and 2,000 women) study published in late 2013 of Caucasian catheterization patients has studied the association between rs6318 genotype and risk of having an "end" cardiac event, defined as either death or a heart attack, in the years following entry into the study (i.e. presumably following their catheterization). Patients were followed for up to 11 years, with a median follow-up time of 5.3 years. Different rs6318 genotypes had statistically significant differences in their odds of having end cardiac events as follows: 29% of (G;-) men; 35% of (C;-) men; ~26% of (G;G) or (C;G) women; and 36% of (C;C) women. This works out to hazard ratios from the fully adjusted model for male rs6318(C;-) compared to the more common (G;-) males of 1.23 (CI: 1.02-1.36, p=0.02), and 1.62 (CI:1.07-2.47, p=0.02) for female (C;C) genotypes compared to the more common (G;G) females. The authors postulate that rs6318 is associated with higher stress-related cortisol levels, and suggest (without any evidence so far) that rs6318(C;C) women and (C;-) men may benefit from either behavioural therapy or the use of a serotonin receptor antagonist such as agomelatine. 'significant excess of Ser allele carriers in patients compared to normal controls' (in 513 patients with recurrent MDD, 649 patients with bipolar affective disorder, and 901 normal controls) Further evidence supporting the association between 5HTR2C gene and bipolar disorder == antipsychotics == in a small sample of 45 autistic patients taking risperidone for up to one year, assoc. w/ prolactin elevation and BMI / waist circumference with risperidone usage rs6313(T) (102T) allele of HTR2A, the rs5443(T) (825T) allele of GNB3, the Rs6318(G) (23Cys) allele of HTR2C, and the rs1801253(C;C) (64Arg/Arg) genotype of ADRB3, were significantly associated with olanzapine-induced weight gain among 164 schizophrenic (per DSM-IV-TR) psychiatric inpatients no association with anti-psychotic induced weight gain noted in 104 Caucasian psychiatric inpatients
C;C
See rs6318. Male catheterization patients at ~1.2x increased risk for subsequent cardiac events, females at ~1.6x increased risk. Likely stronger emotional response to stress, and apparently (slightly?) higher risk for affective disorders (major depressive and bipolar disorders). Poorer lipid profiles have also been reported.
G;G
appears to be common on the 23andMe platform
Source and license
Adapted from rs6318 on SNPedia, using a snapshot taken October 16, 2026. SNPedia content is shared under CC BY-NC-SA 3.0 US, and this page is shared under the same license.
SNPedia is a community-edited wiki. Its entries can be incomplete, out of date or wrong, and nothing here is a diagnosis or medical advice. Magnitude is a community rating of how interesting a genotype is, not a risk score.