rs9333649
A SNP in the KCNH2 gene on chromosome 7. Its most notable genotype is C;T: Romano-Ward Long QT Syndrome
- Gene
- KCNH2
- Location
- Chr 7150,951,679 (GRCh38)
- Highest magnitude
- 5.0Very important
- Tested on
- 23andMe, AncestryDNA
Genotypes
Plus strand, as in 23andMe and AncestryDNA files.
- C;TMost notableBadRomano-Ward Long QT Syndrome
- G;GBadassociated with long QT syndrome
- C;GBadRomano-Ward Long QT Syndrome
- C;CGoodcommon in clinvar
SNPedia records rs9333649 on the minus strand: (A;G), (C;C), (C;G), (G;G). Magnitude rates how notable a genotype is from 0 to 10, not how risky it is.
Related
Conditions, medicines and genes
Other KCNH2 SNPs
- rs189014161C;GLong QT syndrome; other possible cardiac issuesVery important
- rs12720441A;GRomano-Ward Long QT SyndromeVery important
- rs28928904A;TRomano-Ward Long QT SyndromeVery important
- rs121912505C;TRomano-Ward Long QT SyndromeVery important
- rs121912506C;TRomano-Ward Long QT SyndromeVery important
- rs121912507C;TRomano-Ward Long QT SyndromeVery important
- rs121912508A;GRomano-Ward Long QT SyndromeVery important
- rs121912509C;TRomano-Ward Long QT SyndromeVery important
Notes
From SNPedia
Show notes, about 350 words
rs9333649, also known as G572R or Gly572Arg, is a SNP in the KCNH2 gene on chromosome 7. Carrying one copy of the rs9333649(C) allele has been reported at least twice to be associated with long QT syndrome; see OMIM for discussion. This variant meets the criteria published in 2013 by the ACMG regarding incidental findings in exome or genome sequencing, as a variant that they do recommend informing a patient about. In silico investigations on functional and haplotype tag SNPs associated with congenital long QT syndromes (LQTSs). Genomic structure of three long QT syndrome genes: KVLQT1, HERG, and KCNE1. Spectrum of mutations in long-QT syndrome genes. KVLQT1, HERG, SCN5A, KCNE1, and KCNE2. Calorimetric and equilibrium binding studies of the interaction of substrates with glutamine synthetase of Escherichia coli. High-throughput single-strand conformation polymorphism analysis by automated capillary electrophoresis: robust multiplex analysis and pattern-based identification of allelic variants. Long QT syndrome with a high mortality rate caused by a novel G572R missense mutation in KCNH2. Spectrum of mutations in long-QT syndrome genes. KVLQT1, HERG, SCN5A, KCNE1, and KCNE2. Screening for mutations and polymorphisms in the genes KCNH2 and KCNE2 encoding the cardiac HERG/MiRP1 ion channel: implications for acquired and congenital long Q-T syndrome. Automated mutation screening using dideoxy fingerprinting and capillary array electrophoresis. Effect of apomorphine on the antinociceptive activity of morphine. Four potassium channel mutations account for 73% of the genetic spectrum underlying long-QT syndrome (LQTS) and provide evidence for a strong founder effect in Finland. Compendium of cardiac channel mutations in 541 consecutive unrelated patients referred for long QT syndrome genetic testing. Most LQT2 mutations reduce Kv11.1 (hERG) current by a class 2 (trafficking-deficient) mechanism. [Novel mutations of potassium channel KCNQ1 S145L and KCNH2 Y475C genes in Chinese pedigrees of long QT syndrome]. Long QT and Brugada syndrome gene mutations in New Zealand.
G;G
see discussion at rs9333649
Source and license
Adapted from rs9333649 on SNPedia, using a snapshot taken October 16, 2026. SNPedia content is shared under CC BY-NC-SA 3.0 US, and this page is shared under the same license.
SNPedia is a community-edited wiki. Its entries can be incomplete, out of date or wrong, and nothing here is a diagnosis or medical advice. Magnitude is a community rating of how interesting a genotype is, not a risk score.