rs4988321
A SNP in the LRP5 gene on chromosome 11. Its most notable genotype is A;A: slightly increased (~1.3x) risk for osteoporosis
- Gene
- LRP5
- Location
- Chr 1168,406,721 (GRCh38)
- Highest magnitude
- 1.3Minor
- Tested on
- 23andMe, AncestryDNA, FamilyTreeDNA
- Minor allele frequency
- 2%
Genotypes
As shown in 23andMe and AncestryDNA files.
- A;AMost notableBadslightly increased (~1.3x) risk for osteoporosis
- A;GBadvery slightly increased risk for osteoporosis
- G;GGoodnormal
On SNPedia: (A;A), (A;G), (G;G). Magnitude rates how notable a genotype is from 0 to 10, not how risky it is.
Frequency
Share of each genotype in 4 HapMap populations.
- AverageA;A 0% A;G 2% G;G 98%
- European ancestry (Utah)A;A 0% A;G 7% G;G 94%
- Han Chinese (Beijing)A;A 0% A;G 0% G;G 100%
- Japanese (Tokyo)A;A 0% A;G 0% G;G 100%
- Yoruba (Nigeria)A;A 0% A;G 0% G;G 100%
Related
Notes
From SNPedia
Show notes, about 350 words
rs4988321 is a SNP in the LRP5 gene that is also known as Val667Met or V667M; the more common (G) allele encodes the Val (valine), while the rarer (A) allele encodes the Met (methionine), which is the risk allele. rs4988321(A) is associated with vertebral fractures and reduced bone mineral density (BMD), with an overall odds ratio for vertebral fractures of 1.26 per allele (CI: 1.08-1.47; 2001 fractures among 20,488 individuals studied). More specifically, the rs4988321(A) allele was associated with reduced lumbar spine BMD density (p = 3.3 x 10 -8 ), and femoral neck BMD (p = 3.8 x 10 -5 ). Note that rs3736228, another LRP5 SNP (also known as Ala1330Val), was independently associated with BMD in this same study. No association was found between rs4988321 and either hip or spine BMD in a study of 249 Caucasian osteoporotic or osteopenic men. triallelic and on a chip Genetic variation at the low-density lipoprotein receptor-related protein 5 (LRP5) locus modulates Wnt signaling and the relationship of physical activity with bone mineral density in men. Genome-wide association with bone mass and geometry in the Framingham Heart Study. Polymorphisms in the low-density lipoprotein receptor-related protein 5 (LRP5) gene are associated with peak bone mass in non-sedentary men: results from the Odense androgen study. Association between LRP5 polymorphism and bone mineral density: a Bayesian meta-analysis. Replication study of candidate genes/loci associated with osteoporosis based on genome-wide screening. The conjugation of benzoic acid in the African bat, Epomops franqueti. Six novel missense mutations in the LDL receptor-related protein 5 (LRP5) gene in different conditions with an increased bone density. LRP5 gene polymorphisms predict bone mass and incident fractures in elderly Australian women. Oropharyngeal skeletal disease accompanying high bone mass and novel LRP5 mutation. LRP5 mutations in osteoporosis-pseudoglioma syndrome and high-bone-mass disorders. LRP5 coding polymorphisms influence the variation of peak bone mass in a normal population of French-Canadian women.
Source and license
Adapted from rs4988321 on SNPedia, using a snapshot taken October 16, 2026. SNPedia content is shared under CC BY-NC-SA 3.0 US, and this page is shared under the same license.
SNPedia is a community-edited wiki. Its entries can be incomplete, out of date or wrong, and nothing here is a diagnosis or medical advice. Magnitude is a community rating of how interesting a genotype is, not a risk score.