rs10181656

A SNP in the STAT4 gene on chromosome 2. Its most notable genotype is G;G: 1.7x increased SLE risk

Gene
STAT4
Location
Chr 2191,105,153 (GRCh38)
Highest magnitude
2.0Worth knowing
Tested on
23andMe, AncestryDNA, FamilyTreeDNA
Minor allele frequency
25%

Genotypes

As shown in 23andMe and AncestryDNA files.

  1. C;CGoodcommon/normalTypical · 0.060% of people
  2. C;GBad1.7x increased SLE riskMinor · 1.731% of people
  3. G;GMost notableBad1.7x increased SLE riskWorth knowing · 2.09% of people

On SNPedia: (C;C), (C;G), (G;G). Magnitude rates how notable a genotype is from 0 to 10, not how risky it is.

Frequency

Share of each genotype in 4 HapMap populations.

  • AverageC;C 60% C;G 31% G;G 9%
  • European ancestry (Utah)C;C 66% C;G 28% G;G 6%
  • Han Chinese (Beijing)C;C 42% C;G 47% G;G 11%
  • Japanese (Tokyo)C;C 57% C;G 30% G;G 14%
  • Yoruba (Nigeria)C;C 75% C;G 21% G;G 5%

Conditions, medicines and genes

Notes

From SNPedia

Show notes, about 350 words

Several tightly linked SNPs in the STAT4 gene have been linked to risk for risk haplotype for systemic lupus erythematosus (SLE). The strongest association is found for either of two perfectly linked SNP alleles, rs10181656(G) and rs7582694(C), both yielding an odds ratio of 1.71 in this study of ~700 Swedish SLE patients. The risk for SLE was also calculated to increase as a function of the total number of risk alleles for this SNP plus 2 others in the IRF5 gene. Compared to individuals with 0 or 1 risk alleles, the risk for SLE increased 1.82-fold for each additional risk allele from this group. The odds ratio for SLE is 2.08 (CI: 1.53-2.83) for carriers of 2 risk alleles, and goes up to 13.0 (CI: 3.78-44.3) for carriers of 5 or 6 risk alleles (compared to those with 0 or 1). Association of STAT4 with rheumatoid arthritis in the Korean population. Re-evaluation of putative rheumatoid arthritis susceptibility genes in the post-genome wide association study era and hypothesis of a key pathway underlying susceptibility. Specificity of the STAT4 genetic association for severe disease manifestations of systemic lupus erythematosus. STAT4 polymorphism is associated with early-onset type 1 diabetes, but not with late-onset type 1 diabetes. High-density genotyping of STAT4 reveals multiple haplotypic associations with systemic lupus erythematosus in different racial groups. Overlap of disease susceptibility loci for rheumatoid arthritis and juvenile idiopathic arthritis. Variation in STAT4 is associated with systemic lupus erythematosus in a Finnish family cohort. Investigation of rheumatoid arthritis susceptibility genes identifies association of AFF3 and CD226 variants with response to anti-tumour necrosis factor treatment. Evidence for STAT4 as a common autoimmune gene: rs7574865 is associated with colonic Crohn's disease and early disease onset. Genetic risk factors in lupus nephritis and IgA nephropathy--no support of an overlap. Abnormal Genetic and Epigenetic Changes in Signal Transducer and Activator of Transcription 4 in the Pathogenesis of Inflammatory Bowel Diseases.

Source and license

Adapted from rs10181656 on SNPedia, using a snapshot taken October 16, 2026. SNPedia content is shared under CC BY-NC-SA 3.0 US, and this page is shared under the same license.

SNPedia is a community-edited wiki. Its entries can be incomplete, out of date or wrong, and nothing here is a diagnosis or medical advice. Magnitude is a community rating of how interesting a genotype is, not a risk score.