rs2229616

A SNP in the MC4R gene on chromosome 18. Its most notable genotype is T;T: lower risk of metabolic syndrome

Gene
MC4R
Location
Chr 1860,372,043 (GRCh38)
Highest magnitude
2.1Worth knowing
Tested on
23andMe, AncestryDNA, FamilyTreeDNA
Minor allele frequency
2%

Genotypes

Plus strand, as in 23andMe and AncestryDNA files.

  1. T;TMost notableGoodlower risk of metabolic syndromeWorth knowing · 2.1<1% of people
  2. C;TGoodlower risk of metabolic syndromeWorth knowing · 2.05% of people
  3. C;CBadnormalTypical · 0.095% of people
  4. C;CGoodlower BMI; decreased obesity riskWorth knowing · 2.095% of people

SNPedia records rs2229616 on the minus strand: (A;A), (A;G), (G;G), (G;G). Magnitude rates how notable a genotype is from 0 to 10, not how risky it is.

Frequency

Share of each genotype in 10 HapMap populations.

  • AverageT;T <1% C;T 5% C;C 95% C;C 95%
  • European ancestry (Utah)T;T 0% C;T 2% C;C 98% C;C 98%
  • Han Chinese (Beijing)T;T 0% C;T 6% C;C 94% C;C 94%
  • Japanese (Tokyo)T;T 0% C;T <1% C;C 99% C;C 99%
  • Yoruba (Nigeria)T;T 0% C;T 3% C;C 97% C;C 97%
  • African ancestry (Southwest US)T;T 0% C;T 12% C;C 88% C;C 88%
  • Chinese (Denver)T;T <1% C;T 7% C;C 92% C;C 92%
  • Gujarati IndianT;T 1% C;T 6% C;C 93% C;C 93%
  • Luhya (Kenya)T;T 0% C;T 7% C;C 93% C;C 93%
  • Mexican ancestry (Los Angeles)T;T 0% C;T 3% C;C 97% C;C 97%
  • TuscanT;T 0% C;T 2% C;C 98% C;C 98%

Conditions, medicines and genes

Notes

From SNPedia

Show notes, about 300 words

rs2229616, a variant in the MC4R gene known as V103I, has been associated with appetite regulation, body mass index (and thus obesity), and other features of metabolic syndrome. The most common allele is rs2229616(G); the rarer (A) allele encodes the 103I (isoleucine), and this (A) allele has been associated in a study of 8,000+ Caucasians with a significantly decreased waist circumference (-1.46 cm, p = 0.020), decreased glycosylated hemoglobin (HbA1c) (-0.09%, p = 0.040), and increased HDL-cholesterol (HDL-C) (+1.76 mg/dl, P = 0.056), but no change in blood pressure. The odds of having three or more components of the metabolic syndrome were substantially reduced among carriers of an rs2229616(A) allele (odds ratio = 0.46, p = 0.003). Basically, rs2229616(A) carriers are on average slightly leaner than rs2229616(G;G) homozygotes. Melanocortin-4 receptor gene variant I103 is negatively associated with obesity. Medical sequencing at the extremes of human body mass. Non-synonymous polymorphisms in melanocortin-4 receptor protect against obesity: the two facets of a Janus obesity gene. Val103Ile polymorphism of the melanocortin-4 receptor gene (MC4R) in cancer cachexia. Common variants near MC4R are associated with fat mass, weight and risk of obesity. Large effects on body mass index and insulin resistance of fat mass and obesity associated gene (FTO) variants in patients with polycystic ovary syndrome (PCOS). From monogenic to polygenic obesity: recent advances. Melanocortin-4 receptor polymorphisms in Turkish pediatric obese patients. Polymorphisms of INSIG2, MC4R, and LEP are associated with obesity- and metabolic-related traits in schizophrenic patients. Genetic association study between antipsychotic-induced weight gain and the melanocortin-4 receptor gene.

Source and license

Adapted from rs2229616 on SNPedia, using a snapshot taken October 16, 2026. SNPedia content is shared under CC BY-NC-SA 3.0 US, and this page is shared under the same license.

SNPedia is a community-edited wiki. Its entries can be incomplete, out of date or wrong, and nothing here is a diagnosis or medical advice. Magnitude is a community rating of how interesting a genotype is, not a risk score.