rs4795541

A SNP in the SLC6A4 gene on chromosome 17. Its most notable genotype is -;-: normal

Gene
SLC6A4
Location
Chr 1730,237,299 (GRCh38)
Highest magnitude
0.0Typical
Tested on
Not on consumer chips

Genotypes

As shown in 23andMe and AncestryDNA files.

  1. -;-Most notableNot ratednormalTypical · 0.0
  2. -;AGATGCTGGGGGGGCTGCAGGGGGGATGCTGGGGGTGCAGGGGNot ratedcomplex; see detailsTypical · 0.0
  3. AGATGCTGGGGGGGCTGCAGGGGGGATGCTGGGGGTGCAGGGG;AGATGCTGGGGGGGCTGCAGGGGGGATGCTGGGGGTGCAGGGGNot ratedcomplex; see detailsTypical · 0.0

On SNPedia: (-;-), (-;AGATGCTGGGGGGGCTGCAGGGGGGATGCTGGGGGTGCAGGGG), (AGATGCTGGGGGGGCTGCAGGGGGGATGCTGGGGGTGCAGGGG;AGATGCTGGGGGGGCTGCAGGGGGGATGCTGGGGGTGCAGGGG). Magnitude rates how notable a genotype is from 0 to 10, not how risky it is.

Notes

From SNPedia

Show notes, about 230 words

This SNP represents a polymorphic region consisting of an "in/del", i.e. either an insertion or a deletion, of 43 or 44 nucleotides. This SNP is commonly known as the 5-HTTLPR variant of the serotonin transporter SLC6A4 gene. The deletion allele is referred to as the "S" allele, the insertion allele is known as the "L" allele, and hence the genotypes are usually called the LL, SL, and SS genotypes in publications. Note, however, that this is actually a tri-allelic SNP, in that on occasion, a single nucleotide, usually a G, may be present at this position. This SNP has been studied in many contexts, including the following: * Anxiety related behaviours and disorders * Depression ** Response to anti-depressant drugs * Seasonality and seasonal affective disorder * Suicide * Premature ejaculation ** Men with the LL genotype ejaculate about twice as quickly as men with SS or SL genotypes on average, based on a study of 89 Dutch men who suffer from the primary form of premature ejaculation. sciencedaily.com * Attention deficit disorder * Migraine * Bipolar mood disorder * Obsessive compulsive disorder * Fibromyalgia * Irritable bowel syndrome It is beyond the current scope to summarize all the associations seen for this SNP, as well as the lack of replication reported in some follow-on studies.

Source and license

Adapted from rs4795541 on SNPedia, using a snapshot taken October 16, 2026. SNPedia content is shared under CC BY-NC-SA 3.0 US, and this page is shared under the same license.

SNPedia is a community-edited wiki. Its entries can be incomplete, out of date or wrong, and nothing here is a diagnosis or medical advice. Magnitude is a community rating of how interesting a genotype is, not a risk score.