rs5275
A SNP in the PTGS2 gene on chromosome 1. Its most notable genotype is G;G: 0.68x decreased risk for bladder cancer
- Gene
- PTGS2
- Location
- Chr 1186,673,926 (GRCh38)
- Highest magnitude
- 0.0Typical
- Tested on
- 23andMe, AncestryDNA, FamilyTreeDNA
- Minor allele frequency
- 36%
Genotypes
Plus strand, as in 23andMe and AncestryDNA files.
- G;GMost notableGood0.68x decreased risk for bladder cancer
- A;GGood0.68x decreased risk for bladder cancer
- A;ABadnormal
SNPedia records rs5275 on the minus strand: (C;C), (C;T), (T;T). Magnitude rates how notable a genotype is from 0 to 10, not how risky it is.
Frequency
Share of each genotype in 11 HapMap populations.
- AverageG;G 15% A;G 48% A;A 38%
- European ancestry (Utah)G;G 13% A;G 51% A;A 37%
- Han Chinese (Beijing)G;G <1% A;G 36% A;A 64%
- Japanese (Tokyo)G;G 4% A;G 44% A;A 53%
- Yoruba (Nigeria)G;G 35% A;G 54% A;A 11%
- African ancestry (Southwest US)G;G 26% A;G 63% A;A 11%
- Chinese (Denver)G;G 3% A;G 32% A;A 65%
- Gujarati IndianG;G 10% A;G 52% A;A 38%
- Luhya (Kenya)G;G 32% A;G 52% A;A 15%
- Mexican ancestry (Los Angeles)G;G 9% A;G 44% A;A 47%
- Maasai (Kenya)G;G 22% A;G 56% A;A 22%
- TuscanG;G 7% A;G 42% A;A 51%
Related
Conditions, medicines and genes
Other PTGS2 SNPs
- rs689466C;C1.4x higher risk for inflammatory bowel diseasesMinor
- rs5270G;Gcommon in complete genomicsTypical
- rs20415G;GNo summary available.Typical
- rs20417G;GNo summary available.Typical
- rs689465T;T1.5x increased risk for mild asthmaTypical
- rs689469C;CNo summary available.Typical
- rs689470G;GNo summary available.Typical
- rs2206593G;Gcommon in complete genomicsTypical
Notes
From SNPedia
Show notes, about 710 words
rs5275, also known as exon1-+837T>C, is a SNP in the PTGS2 gene. A study of 635 Caucasian bladder cancer patients found a reduced risk associated with the minor (C) allele of rs5275, (odds ratio 0.68, CI: 0.54-0.87, p=0.002, remaining significant after multiple comparison adjustment). (T;T) genotype of PTGS2 8473T>C (rs5275) was significantly correlated with a better survival when compared to the combined T/C and C/C genotype (Hazard ratio [HR] = 0.47; P value = 0.046 and HR = 0.16; P = 0.013, respectively) in colorectal cancer Allellic variants in regulatory regions of cyclooxygenase-2: association with advanced colorectal adenoma. Association of frequent consumption of fatty fish with prostate cancer risk is modified by COX-2 polymorphism. Cyclooxygenase-2 polymorphisms in Parkinson's disease. Genetic polymorphisms in the cyclooxygenase-2 gene, use of nonsteroidal anti-inflammatory drugs, and breast cancer risk. A polymorphism in the 3' untranslated region of the gene encoding prostaglandin endoperoxide synthase 2 is not associated with an increase in breast cancer risk: a nested case-control study. Association of common polymorphisms in inflammatory genes with risk of developing cancers of the upper aerodigestive tract. Lack of association of the cyclooxygenase-2 and inducible nitric oxide synthase gene polymorphism with risk of cervical cancer in Korean population. Polymorphic variants in PTGS2 and prostate cancer risk: results from two large nested case-control studies. Pyrosequencing of polymorphisms in the COX-2 gene (PTGS2) with reported clinical relevance. Differential allelic expression in the human genome: a robust approach to identify genetic and epigenetic cis-acting mechanisms regulating gene expression. Genome-wide association scan identifies a prostaglandin-endoperoxide synthase 2 variant involved in risk of knee osteoarthritis. Association of polymorphisms in cyclooxygenase (COX)-2 with coronary and carotid calcium in the Diabetes Heart Study. Common polymorphisms of cyclooxygenase-2 and prostaglandin E2 receptor and increased risk for acute coronary syndrome in coronary artery disease. Low-penetrance alleles predisposing to sporadic colorectal cancers: a French case-controlled genetic association study. Cyclooxygenase-2 gene polymorphisms reduce the risk of oral premalignant lesions. Dietary omega-3 fatty acids, cyclooxygenase-2 genetic variation, and aggressive prostate cancer risk. No association between cyclooxygenase-2 and uridine diphosphate glucuronosyltransferase 1A6 genetic polymorphisms and colon cancer risk. Toll-like receptor signaling pathway variants and prostate cancer mortality. TNF superfamily gene polymorphism as prognostic factor in early breast cancer. Polymorphisms in the xenobiotic transporter Multidrug Resistance 1 (MDR1) and interaction with meat intake in relation to risk of colorectal cancer in a Danish prospective case-cohort study. Peripheral blood gene expression patterns discriminate among chronic inflammatory diseases and healthy controls and identify novel targets. Cyclooxygenase-2 (COX-2) polymorphisms and risk of inflammatory bowel disease in a Scottish and Danish case-control study. Genetic variants in inflammation-related genes are associated with radiation-induced toxicity following treatment for non-small cell lung cancer. Functional polymorphisms of cyclooxygenase-2 gene and risk for hepatocellular carcinoma. Gallbladder cancer predisposition: a multigenic approach to DNA-repair, apoptotic and inflammatory pathway genes. Cyclooxygenase-2 polymorphisms and susceptibility to esophageal cancer: a meta-analysis. The risk of coronary thrombosis with cyclo-oxygenase-2 inhibitors does not vary with polymorphisms in two regions of the cyclo-oxygenase-2 gene. Polymorphisms in COX-2 gene influence prostate cancer susceptibility in a northern Indian cohort. Polymorphisms in cycloxygenase-2 gene and breast cancer prognosis: association between PTGS2 haplotypes and histopathological features. A genetic variant in 3'-untranslated region of cyclooxygenases-2 gene is associated with risk of gastric cancer in a chinese population. Influence of COX-2 and OXTR polymorphisms on treatment outcome in treatment resistant depression.
Source and license
Adapted from rs5275 on SNPedia, using a snapshot taken October 16, 2026. SNPedia content is shared under CC BY-NC-SA 3.0 US, and this page is shared under the same license.
SNPedia is a community-edited wiki. Its entries can be incomplete, out of date or wrong, and nothing here is a diagnosis or medical advice. Magnitude is a community rating of how interesting a genotype is, not a risk score.