rs4986791

A SNP in the TLR4 gene on chromosome 9. Its most notable genotype is T;T: complex; see details

Gene
TLR4
Location
Chr 9117,713,324 (GRCh38)
Highest magnitude
2.5Worth knowing
Tested on
23andMe, AncestryDNA, FamilyTreeDNA
Minor allele frequency
3%

Genotypes

As shown in 23andMe and AncestryDNA files.

  1. C;CGoodnormalTypical · 0.094% of people
  2. C;TNot ratedcomplex; see detailsTypical · 0.06% of people
  3. T;TMost notableNot ratedcomplex; see detailsWorth knowing · 2.5<1% of people

On SNPedia: (C;C), (C;T), (T;T). Magnitude rates how notable a genotype is from 0 to 10, not how risky it is.

Frequency

Share of each genotype in 10 HapMap populations.

  • AverageC;C 94% C;T 6% T;T <1%
  • European ancestry (Utah)C;C 94% C;T 6% T;T 0%
  • Han Chinese (Beijing)C;C 100% C;T 0% T;T 0%
  • Japanese (Tokyo)C;C 100% C;T 0% T;T 0%
  • Yoruba (Nigeria)C;C 96% C;T 4% T;T 0%
  • African ancestry (Southwest US)C;C 95% C;T 6% T;T 0%
  • Chinese (Denver)C;C 99% C;T <1% T;T 0%
  • Gujarati IndianC;C 80% C;T 19% T;T 1%
  • Mexican ancestry (Los Angeles)C;C 86% C;T 14% T;T 0%
  • Maasai (Kenya)C;C 99% C;T <1% T;T 0%
  • TuscanC;C 88% C;T 12% T;T 0%

Notes

From SNPedia

Show notes, about 430 words

rs4986791, a SNP also known as Thr399Ile (and also 1196C/T) in the TLR4 gene, is often studied along with a cosegregating SNP known as Asp299Gly, rs4986790. (TLR4 encodes a receptor involved in the innate immune response.) Together, these SNPs have been reported to be associated with a wide variety of both infectious and non-infectious diseases, although there are conflicting or even contradictory results also reported in some cases. The risk allele for rs4986791 is (T). Reported associations include : * Diabetic neuropathy ** These SNPs may be protective * Heart disease ** Men with the risk alleles for both SNPs are at increased risk for myocardial infarction in this study of over 2000 individuals. ** rs4986790(G) carriers are not at increased risk for myocardial infartions, at least in this study of ~200 individuals. ** rs4986790(G) carriers are less likely to have heart attacks, in this study of ~400 individuals. ** Individuals with the risk alleles for both SNPs have a lower incidence of carotid stenosis * Premature birth ** Individuals with the risk alleles for both SNPs are at higher risk for having their pregnancies associated with premature birth. * Bacterial vaginosis ** Pregnant rs4986790(G) carriers are at increased risk for higher pH and a 10 fold higher level of certain bacteria * Bacterial infection ** Individuals with the risk alleles for both SNPs are more prone to gram-negative bacterial infections * Septic shock ** Individuals with the risk alleles for both SNPs are at higher risk for septic shock * Respiratory syncytial virus infection ** Individuals with the risk alleles for both SNPs are at higher risk for this type of viral infection. * Asthma ** Although not seen to influence the incidence of developing asthma, rs4986790(G) carriers who had asthma are reported to be more severely affected. * Allograft rejection ** Carriers of the risk alleles of either rs4986790 or rs4986791 have a lower rate of acute allograft rejection following lung transplantation. * Allograft complications ** A study of 300+ recipients of hematopoietic-cell transplants concluded that the adjusted hazard ratio for a recipient of developing a life-threatening invasive aspergillosis infection was 6.16x higher (CI: 1.97-19.26, p=0.002) if the donor carried these TLR4 risk alleles. This risk was statistically significant for unrelated recipients of transplants (odds ratio, 5.0, CI: 1.04-24.01, p=0.04) but did not quite meet the p=0.05 significance criteria for related recipients (odds ratio, 2.29, CI: 0.93-5.68, p=0.07).

Source and license

Adapted from rs4986791 on SNPedia, using a snapshot taken October 16, 2026. SNPedia content is shared under CC BY-NC-SA 3.0 US, and this page is shared under the same license.

SNPedia is a community-edited wiki. Its entries can be incomplete, out of date or wrong, and nothing here is a diagnosis or medical advice. Magnitude is a community rating of how interesting a genotype is, not a risk score.