rs1057910
A SNP in the CYP2C9 gene on chromosome 10. Its most notable genotype is C;C: CYP2C9*3 homozygote; average 80% reduction in warfarin metabolism; reduced metabolism of number of other drugs
- Gene
- CYP2C9
- Location
- Chr 1094,981,296 (GRCh38)
- Highest magnitude
- 4.0Very important
- Tested on
- 23andMe, AncestryDNA
- Minor allele frequency
- 4%
Genotypes
As shown in 23andMe and AncestryDNA files.
- A;AGoodnormal; no effect on warfarin metabolism
- A;CBadCYP2C9*3 carrier; average 40% reduction in warfarin metabolism
- C;CMost notableBadCYP2C9*3 homozygote; average 80% reduction in warfarin metabolism; reduced metabolism of number of other drugs
On SNPedia: (A;A), (A;C), (C;C). Magnitude rates how notable a genotype is from 0 to 10, not how risky it is.
Frequency
Share of each genotype in 9 HapMap populations.
- AverageA;A 90% A;C 10% C;C <1%
- European ancestry (Utah)A;A 89% A;C 12% C;C 0%
- Han Chinese (Beijing)A;A 91% A;C 9% C;C 0%
- Japanese (Tokyo)A;A 97% A;C 4% C;C 0%
- Yoruba (Nigeria)A;A 99% A;C <1% C;C 0%
- African ancestry (Southwest US)A;A 95% A;C 5% C;C 0%
- Chinese (Denver)A;A 91% A;C 9% C;C 0%
- Gujarati IndianA;A 74% A;C 25% C;C 1%
- Mexican ancestry (Los Angeles)A;A 90% A;C 11% C;C 0%
- TuscanA;A 85% A;C 15% C;C 0%
Related
Conditions, medicines and genes
Other CYP2C9 SNPs
- rs1057909G;GCYP2C9_42612A>G homozygoteVery important
- rs72558188-;-inactive CYP2C9Very important
- rs1057911A;Tcarrier of one CYP2C9_50298A>T alleleImportant
- rs10509680G;TNo summary available.Important
- rs9332131-;-CYP2C9*6 homozygoteWorth knowing
- rs28371685T;TCYP2C9*11 homozygoteWorth knowing
- rs28371686G;GCYP2C9*5 homozygoteWorth knowing
- rs72558189A;ACYP2C9*14 homozygoteWorth knowing
Genosets
- Gs126Poor warfarin metabolizerImportant
- Gs162CYP2C9 Poor MetabolizersImportant
- Gs191Impaired NSAID drug metabolismImportant
- Gs127Intermediate warfarin metabolizerImportant
- Gs161CYP2C9 Intermediate MetabolizersWorth knowing
- Gs160CYP2C9 Extensive MetabolizersMinor
Genosets combine several genotypes. Twofold checks them in your report.
Notes
From SNPedia
Show notes, about 520 words
SNP rs1057910(A), located in the cytochrome p450 CYP2C9 gene, most commonly encodes the amino acid isoleucine at position 359, and the resulting allele is also known as CYP2C9*1. rs1057910(C) encodes a leucine at this same position, and the resulting allele is called CYP2C9*3. This SNP is also known as Ile359Leu or A1075C. The effect of CYP2C9 variants on drug metabolism should not be predicted without also considering CYP2C9*2, defined as the common loss of function variant rs1799853(T) (NM_000771:c.430C>T, NP_000762:p.144R>C) pharmgkb.org. Studies of the effects of these alleles include: * rs1057910(C;C) genotypes may clear drugs like celecoxib (trade name Celebrex) twice as slowly as rs1057910(A;A) genotypes; the rs1057910(A;C) genotypes are in-between clearance rates. Lower clearance rates will lead to higher internal concentrations of the drug. It is not clear whether this could lead to increased efficacy and/or increased side effects. * rs1057910(C;C) genotypes are poor metabolizers of tolbutamide, a sulfonylurea hypoglycemic drug used in the treatment of diabetes. * rs1057910(C;C) genotypes are poor metabolizers of phenytoin, a drug used to treat epilepsy, and therefore tend to need lower doses. Note however that the CPIC (and FDA) recommend testing for the HLA-B*15:02 allele, since carriers are at significantly increased risk of Stevens-Johnson syndrome (SJS/PTEN). * rs1057910(C;C) genotypes are poor metabolizers of glipizide, a second generation sulfonylurea drug structurally similar to tolbutamide and also used as an oral hypoglycemic agent. * rs1057910(C;C) genotypes are poor metabolizers of warfarin, and therefore unusually sensitive. * See also OMIM 601130.0001 Individuals carrying this SNP may show increased risk of developing acute gastrointestinal bleeding during the use of NSAIDs that are CYP2C8 or CYP2C9 substrates, such as aceclofenac, celecoxib, diclofenac, ibuprofen, indomethazine, lornoxicam, meloxicam, naproxen, piroxicam, tenoxicam and valdecoxib. 12x risk of severe cutaneous adverse reactions when taking antiepileptic drug phenytoin.
C;C
* 12x risk of severe cutaneous adverse reactions when taking antiepileptic drug phenytoin. * rs1057910(C;C) genotypes may clear drugs like celecoxib (trade name Celebrex) twice as slowly as rs1057910(A;A) genotypes; the rs1057910(A;C) genotypes are in-between clearance rates. Lower clearance rates will lead to higher internal concentrations of the drug. It is not clear whether this could lead to increased efficacy and/or increased side effects. * rs1057910(C;C) genotypes are poor metabolizers of tolbutamide, a sulfonylurea hypoglycemic drug used in the treatment of diabetes. * rs1057910(C;C) genotypes are poor metabolizers of phenytoin, a drug used to treat epilepsy, and therefore tend to need lower doses. * rs1057910(C;C) genotypes are poor metabolizers of glipizide, a second generation sulfonylurea drug structurally similar to tolbutamide and also used as an oral hypoglycemic agent. * rs1057910(C;C) genotypes are poor metabolizers of warfarin, and therefore unusually sensitive.
Source and license
Adapted from rs1057910 on SNPedia, using a snapshot taken October 16, 2026. SNPedia content is shared under CC BY-NC-SA 3.0 US, and this page is shared under the same license.
SNPedia is a community-edited wiki. Its entries can be incomplete, out of date or wrong, and nothing here is a diagnosis or medical advice. Magnitude is a community rating of how interesting a genotype is, not a risk score.