rs11209026
A SNP in the IL23R gene on chromosome 1. Its most notable genotype is A;A: 0.26x lower risk for certain autoimmune diseases.
- Gene
- IL23R
- Location
- Chr 167,240,275 (GRCh38)
- Highest magnitude
- 3.0Important
- Tested on
- 23andMe, AncestryDNA
- Minor allele frequency
- 3%
Genotypes
As shown in 23andMe and AncestryDNA files.
- A;AMost notableGood0.26x lower risk for certain autoimmune diseases.
- A;GGood0.26x lower risk for certain autoimmune diseases.
- G;GBadNormal, but higher risk for certain autoimmune diseases.
On SNPedia: (A;A), (A;G), (G;G). Magnitude rates how notable a genotype is from 0 to 10, not how risky it is.
Frequency
Share of each genotype in 10 HapMap populations.
- AverageA;A <1% A;G 4% G;G 96%
- European ancestry (Utah)A;A 0% A;G 8% G;G 92%
- Han Chinese (Beijing)A;A 0% A;G 0% G;G 100%
- Japanese (Tokyo)A;A 0% A;G 0% G;G 100%
- Yoruba (Nigeria)A;A 0% A;G 3% G;G 97%
- African ancestry (Southwest US)A;A 0% A;G 4% G;G 97%
- Chinese (Denver)A;A 0% A;G <1% G;G 99%
- Gujarati IndianA;A 0% A;G 1% G;G 99%
- Luhya (Kenya)A;A 0% A;G 1% G;G 99%
- Maasai (Kenya)A;A <1% A;G 6% G;G 94%
- TuscanA;A 1% A;G 15% G;G 84%
Related
Conditions, medicines and genes
Other IL23R SNPs
- rs2201841T;TNo summary available.Worth knowing
- rs7530511T;T9x increased risk for Graves diseaseWorth knowing
- rs10889677A;C1.5x increased risk for certain autoimmune diseases; 2x increased risk for Graves diseaseWorth knowing
- rs11465770C;Tpossibly lower risk of Crohn's Disease (OR=0.30)Minor
- rs11465804G;G0.68x lower risk for spondylitisMinor
- rs1004819G;G1.5x risk of Crohn's disease, 1.2 for developing ankylosing spondylitisMinor
- rs1343151G;Gnormal riskTypical
- rs1495965T;T1.2x higher risk for spondylitisTypical
Notes
From SNPedia
Show notes, about 470 words
A relatively rare allele at SNP rs11209026, in the IL23R gene, appears to provide a fairly strong protective effect against the development of Crohn's disease in both Jewish and non-Jewish populations. Note that in this study the (A;A) and (A;G) genotypes were combined for statistical reasons (there were too few (A;A) individuals to study by themselves), so the risk is shown as equal for both. associated With Inflammatory Bowel Diseases but Not With Celiac Disease rs11209026 had a protective effect for IBD in the case-control analysis (odds ratio [OR] 0.19, 95% confidence interval [CI] 0.10-0.37, P= 6.6E-09). Both CD (OR 0.14, CI 0.06-0.37, P= 3.9E-07) and UC (OR 0.33, CI 0.15-0.73, P= 1.4E-03) were associated with IL23R. rs2241880 was associated with CD susceptibility (OR 1.36, CI 1.12-1.66, P= 0.0017). The population-attributable risk of carrying allele G is 0.24 and is 0.19 for homozygosity for allele G in CD. With reference to ankylosing spondylitis, the rs11209026(A) allele also has a protective effect. The odds ratio for carriers is 0.63 (p=2.8x10e-5) based on a large study of over 1,000 Caucasian patients.PMID 17952073, PMID 18037607 This SNP is also part of a haplotype with rs7530511 associated with psoriasis.. And in rs11209026 was also confirmed to be associated with psoriasis. significant associations with rs1004819, rs7517847, and rs11209026. Having any CARD15 variant was associated with a significant risk for CD (P < 0.0001). Replicated reduced risk for Crohn's disease and ulcerative colitis with rs11209026(A) allele in a study of Italian patients. A genome-wide association study using DNA samples from 1,052 individuals with ulcerative colitis and preexisting data from 2,571 controls, all of European ancestry, concluded that this SNP and several others were associated with altered risk for the disease.
A;A
Greatly decreased risk of Ankylosing Spondylitis (0.36x), Chron's Disease, Psoriasis, and Ulcerative Colitis. This is the extremely rare homozygous mutant version of the interleukin-23 (IL-23) receptor.
A;G
Substantially decreased risk of Ankylosing Spondylitis (0.6x), Chron's Disease (0.37x), Psoriasis (0.6x), and Ulcerative Colitis (0.59x). This is the rare version of the interleukin-23 (IL-23) receptor.
G;G
Almost everyone has this form, but it indicates a slightly higher risk of Ankylosing Spondylitis, Crohn's Disease (1.09x), Psoriasis (1.06x), and Ulcerative Colitis (1.06x). The risk is much greater than for the rare version. This is the interleukin-23 (IL-23) receptor. [[Media:http://www.the-rheumatologist.org/details/article/2528901/Neutralizing_IL-23_and_Its_Targets_May_Improve_Ankylosing_Spondylitis.html] Neutralizing IL-23 and Its Targets May Improve Ankylosing Spondylitis by Lara C. Pullen, PhD in The Rheumatologist newsmagazine ]
Source and license
Adapted from rs11209026 on SNPedia, using a snapshot taken October 16, 2026. SNPedia content is shared under CC BY-NC-SA 3.0 US, and this page is shared under the same license.
SNPedia is a community-edited wiki. Its entries can be incomplete, out of date or wrong, and nothing here is a diagnosis or medical advice. Magnitude is a community rating of how interesting a genotype is, not a risk score.