Chromosome X
128 well-documented SNPs on chromosome x, in order of position (GRCh38).
- rs4129148CSF2RA · 1,029,445C;C>3x risk of schizophreniaImportant
- rs6603272IL3RA · 1,352,245G;G>2.74x increased risk of developing schizophreniaWorth knowing
- rs12393627ARSE · 2,967,682A;Acommon genotypeTypical
- rs59166874,678,097G;Gcommon on affy axiom dataTypical
- rs59345058,945,785T;Tmost common genotype, lower testosteroneTypical
- rs5934953MID1 · 11,030,572T;Tcommon on affy axiom dataTypical
- rs3764880TLR8 · 12,906,707A;A1.2 - 1.8x increased tuberculosis riskMinor
- rs6528024GPM6B · 13,912,803C;Ccommon genotypeTypical
- rs5955543NHS · 17,680,277A;Acommon genotypeTypical
- rs281865360RS1 · 18,642,058C;CX-linked retinoschisisVery important
- rs2229137PDHA1 · 19,357,664A;Acommon in clinvarTypical
- rs3810710PDHA1 · 19,357,664A;ANo summary available.Typical
- rs5951698PHEX · 22,116,540A;Acommon genotypeTypical
- rs7890572IL1RAPL1 · 29,622,701A;Acommon on affy axiom dataTypical
- rs1800280DMD · 31,478,233T;Tcommon on affy axiom dataTypical
- rs1800278DMD · 31,478,309C;CNo summary available.Typical
- rs1064325DMD · 32,345,999G;Gcommon in clinvarTypical
- rs1801187DMD · 32,362,879C;Ccommon in clinvarTypical
- rs228406DMD · 32,485,077C;CNo summary available.Typical
- rs872690SYTL5 · 37,995,474T;Tcommon on affy axiom dataTypical
- rs5963409OTC · 38,351,716A;A1.19x increased risk for Alzheimer's diseaseTypical
- rs1800321OTC · 38,367,350A;Acommon in clinvarTypical
- rs909525MAOA · 43,693,955C;TProbably one Warrior Gene and one non-Warrior Gene.Worth knowing
- rs6323MAOA · 43,731,789T;Treduced MAOA activityImportant
- rs3027409MAOA · 43,747,786T;Tcommon on affy axiom dataTypical
- rs3027415MAOB · 43,755,194T;TNo summary available.Typical
- rs1799836MAOB · 43,768,752G;GNo summary available.Typical
- rs120746347,811,022G;Gcommon genotypeTypical
- rs28935174EBP · 48,527,256G;Gcommon in clinvarTypical
- rs33910054CACNA1F · 49,205,282C;Ccommon in clinvarTypical
- rs2294021CCDC22 · 49,249,149T;Tcommon in clinvarTypical
- rs12012704AKAP4 · 50,192,695G;Gcommon on affy axiom dataTypical
- rs3810682BMP15 · 50,910,775C;CcommonTypical
- rs17003221BMP15 · 50,916,280C;Ccommon in clinvarTypical
- rs594557251,486,831A;ANo summary available.Typical
- rs782663655KDM5C · 53,194,297G;Gcommon in clinvarTypical
- rs424002355,366,646C;Ccommon genotypeTypical
- rs387906709UBQLN2 · 56,565,363A;AAmyotrophic lateral sclerosis, type 15Very important
- rs1044165VSIG4 · 66,021,884G;GNo summary available.Typical
- rs1385699EDA2R · 66,605,144T;Tincreased risk of baldnessWorth knowing
- rs92539167,120,595A;Aunlikely to go baldImportant
- rs662516367,291,142A;Aincreased risk of baldnessMinor
- rs222384167,350,329C;Cless likely to go baldWorth knowing
- rs1200722967,528,513C;CIncreased risk for incident vascular dementiaTypical
- rs6152AR · 67,545,785A;Awon't go baldVery important
- rs1337080AR · 67,659,077A;Acommon genotypeTypical
- rs5031002AR · 67,722,783G;Gcommon on affy axiom dataTypical
- rs9332969AR · 67,722,899G;Gcommon in clinvarTypical
- rs9332971AR · 67,722,944G;Gcommon in clinvarTypical
- rs55149274,352,154T;TNo summary available.Typical
- rs5937843SLC16A2 · 74,529,484T;Tcommon in clinvarTypical
- rs1343879MAGEE2 · 75,784,694C;Ccommon on affy axiom dataTypical
- rs2227291ATP7A · 78,013,005G;Gcommon in clinvarTypical
- rs596825583,999,684C;Cslower AIDS progression (8 years)Minor
- rs1201251987,935,349T;Tcommon on affy axiom dataTypical
- rs594143690,033,228C;Ccommon on affy axiom dataTypical
- rs5984894PCDH11X · 92,138,738G;GnormalTypical
- rs7474275BTK · 101,370,019A;Acommon in clinvarTypical
- rs128620187BTK · 101,375,248G;Gcommon in clinvarTypical
- rs397515870GLA · 101,400,692T;TFabry diseaseVery important
- rs104894845GLA · 101,401,752C;TFamilial hypertrophic cardiomyopathy possible; but significance is uncertainVery important
- rs2233695PLP1 · 103,776,965C;Ccommon in clinvarTypical
- rs11543022PLP1 · 103,785,621C;Ccommon in clinvarTypical
- rs12688128IL1RAPL2 · 104,747,771T;TNo summary available.Typical
- rs1804495SERPINA7 · 106,034,370A;ANo summary available.Typical
- rs2234036SERPINA7 · 106,035,377C;Ccommon in clinvarTypical
- rs1050086SERPINA7 · 106,036,488C;Ccommon in clinvarTypical
- rs5973822ATG4A · 108,153,728A;Acommon genotypeTypical
- rs1057519337AMMECR1 · 110,264,543T;TAlport syndrome; most likely in males due to X-linkageVery important
- rs1057519338AMMECR1 · 110,264,571A;AAlport syndrome; most likely in males due to X-linkageVery important
- rs3027802ALG13 · 111,764,287G;GNo summary available.Typical
- rs7050529TRPC5 · 111,912,005G;GNo summary available.Typical
- rs3813929HTR2C · 114,584,047C;Cpossible weight gain if taking olanzapineTypical
- rs518147HTR2C · 114,584,109G;Gless weight gain if taking olanzapineTypical
- rs6318HTR2C · 114,731,326C;C1.4x increased risk for cardiac events in patients; apparently stress (cortisol) relatedWorth knowing
- rs1414334HTR2C · 114,903,581C;Cassociated with metabolic syndrome when taking antipsychoticsWorth knowing
- rs7879933UBE2A · 119,583,024C;Ccommon genotypeTypical
- rs17261572C1GALT1C1 · 120,626,774T;TTn polyagglutination syndrome; somatic mutationWorth knowing
- rs9697983GLUD2 · 121,049,176T;Tcommon in clinvarTypical
- rs1034428GRIA3 · 123,303,197G;Gcommon/normalTypical
- rs4825476GRIA3 · 123,307,628G;G1.9x higher risk of suicidal thoughts when taking citalopramWorth knowing
- rs387907301XIAP · 123,886,270A;AX-linked lymphoproliferative syndromeVery important
- rs7060947TENM1 · 124,939,813A;Acommon genotypeTypical
- rs3788853XPNPEP2 · 129,736,814T;TNo summary available.Typical
- rs17324272133,003,128T;TNo summary available.Typical
- i5007022F9 · 138,623,232A;G“royal disease” also known as hemophilia B or Christmas diseaseVery important
- rs398122990F9 · 139,541,073A;G“royal disease” also known as hemophilia B or Christmas diseaseVery important
- rs6048F9 · 139,551,121A;Gslightly lower risk (10-20%) of deep vein thrombosisMinor
- rs137852283F9 · 139,561,836C;CHemophilia B (severity varies)Very important
- rs176026MAGEC3 · 141,895,341A;GSlightly higher (~1.4x?) risk for ovarian cancerMinor
- rs1980459143,264,110A;ANo summary available.Typical
- rs12395818146,103,205T;TNo summary available.Typical
- rs12012834147,381,463G;GNo summary available.Typical
- rs5904818147,961,254C;CnormalTypical
- rs1141608IDS · 149,501,018G;Gcommon in clinvarTypical
- rs11156606ABCD1 · 153,741,041A;Acommon/normalTypical
- rs104894760AVPR2 · 153,905,816C;Ccommon in clinvarTypical
- rs61749738MECP2 · 154,031,145C;Cpossible: Rett syndromeVery important
- rs2075596MECP2 · 154,031,941A;Acommon in clinvarTypical
- rs61754424MECP2 · 154,032,538A;GProbably Benign Rett Syndrome genotype: Feedback WelcomeMinor
- rs3027935MECP2 · 154,039,017C;CNo summary available.Typical
- rs17435MECP2 · 154,046,529A;T1.4x increased risk for lupusWorth knowing
- rs1734787MECP2 · 154,059,995A;AnormalTypical
- rs5987201MECP2 · 154,064,591C;CNo summary available.Typical
- rs1734791MECP2 · 154,065,469A;A1.4x increased risk for lupusWorth knowing
- rs1734792MECP2 · 154,075,609A;AnormalTypical
- rs5945175MECP2 · 154,093,299T;TNo summary available.Typical
- rs2315122OPN1LW · 154,156,369T;Tcommon on affy axiom dataTypical
- rs34952165DNASE1L1 · 154,403,570C;Ccommon on affy axiom dataTypical
- rs72554665G6PD · 154,532,269G;GG6PD deficiencyVery important
- rs137852336G6PD · 154,532,625T;TG6PD deficiencyVery important
- rs137852329G6PD · 154,532,765T;TG6PD deficiencyVery important
- rs76723693G6PD · 154,533,025G;GG6PD deficiency; Hb1Ac value may need adjusting for diabetes diagnosisVery important
- rs137852318G6PD · 154,533,596G;GG6PD deficiencyVery important
- rs137852332G6PD · 154,534,389T;TG6PD deficiencyVery important
- rs137852330G6PD · 154,534,390A;AG6PD deficiencyVery important
- rs5030868G6PD · 154,534,419A;AHomozygous/Hemizygous mutantVery important
- rs267606836G6PD · 154,534,438G;Gcommon in clinvarTypical
- rs2515904G6PD · 154,534,556G;Gcommon in clinvarTypical
- rs1050829G6PD · 154,535,277C;TG6PD Type A/B; possibly benign thoughWorth knowing
- rs267606835G6PD · 154,535,336C;GCarrier of G6PD deficiency mutation; variable expressivityImportant
- rs1050828G6PD · 154,536,002T;TG6PD deficiency; Hb1Ac value may need adjusting for diabetes diagnosisVery important
- rs762516G6PD · 154,536,448C;Ccommon/normalTypical
- rs137852340G6PD · 154,546,061C;CG6PD deficiencyVery important
- rs2728726DKC1 · 154,770,804C;Ccommon in clinvarTypical
- rs5987027MPP1 · 154,785,832C;Ccommon genotypeTypical
- rs36101366SMIM9 · 154,836,218T;TNo summary available.Typical
- rs2228152F8 · 154,931,407A;AHemophilia A (severity varies)Very important
No matches.
Source and license
Adapted from SNPedia, using a snapshot taken October 16, 2026. SNPedia content is shared under CC BY-NC-SA 3.0 US, and this page is shared under the same license.
SNPedia is a community-edited wiki. Its entries can be incomplete, out of date or wrong, and nothing here is a diagnosis or medical advice. Magnitude is a community rating of how interesting a genotype is, not a risk score.