Chromosome 13
229 well-documented SNPs on chromosome 13, in order of position (GRCh38).
- rs2880301TPTE2 · 19,526,394C;Ccommon in complete genomicsTypical
- rs6490525GJA3 · 20,162,077C;Ccommon genotypeTypical
- rs80338947GJB2 · 20,189,222-;GAGCarrier of a recessive deafness mutationImportant
- rs80338943GJB2 · 20,189,347-;-deafness associatedVery important
- rs28931594GJB2 · 20,189,434T;TDeafness and keratitis; possible dominant or recessiveVery important
- rs35887622GJB2 · 20,189,481A;CCarrier of a recessive deafness mutationImportant
- rs2274084GJB2 · 20,189,503C;Ccommon genotypeTypical
- rs9550642LOC100133618 · 20,375,953A;A2.2x riskTypical
- rs4770403SGCG · 23,180,988G;Gcommon in clinvarTypical
- rs9552911SGCG · 23,290,518G;Gcommon genotypeTypical
- rs4770433SACS · 23,329,652A;Acommon in clinvarTypical
- rs2031640SACS · 23,355,916A;Acommon on affy axiom dataTypical
- rs10162002LINC00327 · 23,468,371G;Gcommon in complete genomicsTypical
- rs2765086ANKRD20A19P · 23,930,816C;CNo summary available.Typical
- rs9581094LOC105370117 · 24,508,492T;Tcommon on affy axiom dataTypical
- rs153053024,673,148A;Acommon genotypeTypical
- rs17511627RNF6 · 26,150,190A;Acommon in complete genomicsTypical
- rs1708500726,957,130C;C>1.35x increased risk for ulcerative colitisTypical
- rs1050738027,305,389A;Acommon on affy axiom dataTypical
- rs733633227,484,267A;Acommon in complete genomicsTypical
- rs7097POLR1D · 27,623,299C;Ccommon in clinvarTypical
- rs12584067FLT1 · 28,318,120C;Ccommon in complete genomicsTypical
- rs2296189FLT1 · 28,319,505A;Acommon in clinvarTypical
- rs17619601FLT1 · 28,326,373C;Ccommon in complete genomicsTypical
- rs7335588FLT1 · 28,410,365G;Gcommon in complete genomicsTypical
- rs1305088SLC46A3 · 28,704,313C;Ccommon in complete genomicsTypical
- rs327127MTUS2 · 28,944,763G;Gcommon in complete genomicsTypical
- rs2479768MTUS2 · 29,046,517G;Gcommon genotypeTypical
- rs11618202HMGB1 · 30,539,242T;Tcommon on affy axiom dataTypical
- rs4076128ALOX5AP · 30,731,006A;A1.8x increased breast cancer risk for women having high linoleic acid dietsTypical
- rs10507391ALOX5AP · 30,737,959A;AnormalTypical
- rs3922435ALOX5AP · 30,740,543C;Ccommon genotypeTypical
- rs4769874ALOX5AP · 30,752,304G;GNo summary available.Typical
- rs9542236B3GLCT · 31,245,188T;Tcommon in clinvarTypical
- rs3EEF1DP3 · 31,872,705C;CNo summary available.Typical
- rs206118BRCA2 · 32,315,655A;Acommon in clinvarTypical
- rs9567552BRCA2 · 32,316,090G;Gcommon/normalTypical
- rs1799943BRCA2 · 32,316,435G;Gcommon in clinvarTypical
- rs397507713BRCA2 · 32,325,184G;TBRCA2 variant considered likely to be pathogenic for breast cancer; see discussion thoughVery important
- rs80359604BRCA2 · 32,329,469-;GTBRCA2 variant considered pathogenic for breast cancerVery important
- rs80359671BRCA2 · 32,331,004-;CAAATBRCA2 variant considered pathogenic for breast cancerVery important
- rs80359675BRCA2 · 32,331,008-;TCAAABRCA2 variant considered pathogenic for breast cancerVery important
- rs766173BRCA2 · 32,332,343C;CNo summary available.Worth knowing
- rs144848BRCA2 · 32,332,592C;Cvery slightly increased breast cancer riskWorth knowing
- rs80359284BRCA2 · 32,332,886-;GBRCA2 variant considered pathogenic for breast cancerVery important
- rs1799944BRCA2 · 32,337,326G;GNo summary available.Worth knowing
- rs1801406BRCA2 · 32,337,751A;Acommon in clinvarTypical
- rs543304BRCA2 · 32,338,162C;TBenignTypical
- rs746229647BRCA2 · 32,338,201-;TGBRCA2 variant considered pathogenic for breast cancerVery important
- rs80359406BRCA2 · 32,338,209-;ABRCA2 variant considered pathogenic for breast cancerVery important
- rs80359479BRCA2 · 32,339,423-;ABRCA2 variant considered pathogenic for breast cancerVery important
- rs80358740BRCA2 · 32,339,514A;CBRCA2 variant considered pathogenic for breast cancerVery important
- rs80359507BRCA2 · 32,339,705-;ABRCA2 variant considered pathogenic for breast cancerVery important
- rs41293497BRCA2 · 32,340,037A;Cconsidered a causal BRCA2 breast cancer mutationVery important
- rs4987117BRCA2 · 32,340,099T;TNo summary available.Worth knowing
- rs1799954BRCA2 · 32,340,455T;TNo summary available.Worth knowing
- rs4942440BRCA2 · 32,344,830G;Gcommon in clinvarTypical
- rs28897743BRCA2 · 32,346,896A;Gconsidered a causal BRCA2 breast cancer mutationVery important
- rs169547BRCA2 · 32,355,250C;TBenign variantMinor
- rs9534262BRCA2 · 32,362,509C;Ccommon/normalTypical
- rs28897746BRCA2 · 32,363,259C;TBRCA2 variant considered pathogenic for breast cancerVery important
- rs28897751BRCA2 · 32,370,445T;Tcommon in clinvarTypical
- rs11571746BRCA2 · 32,370,971C;CNo summary available.Worth knowing
- rs11571747BRCA2 · 32,371,035C;CNo summary available.Worth knowing
- rs4942486BRCA2 · 32,379,251C;Ccommon/normalTypical
- rs4987047BRCA2 · 32,379,392T;TNo summary available.Worth knowing
- rs28897756BRCA2 · 32,379,913A;ABRCA2, breast cancer mutationVery important
- rs10492396BRCA2 · 32,384,750G;Gcommon in clinvarTypical
- rs80359198BRCA2 · 32,394,717A;CBRCA2 variant considered pathogenic for breast cancerVery important
- rs28897759BRCA2 · 32,394,803A;TBRCA2 variant, possibly causal mutation but not definiteVery important
- rs4987049BRCA2 · 32,398,437A;CBRCA2 variant considered pathogenic for breast cancerVery important
- rs11571833BRCA2 · 32,398,489T;TNo summary available.Worth knowing
- rs1801426BRCA2 · 32,398,747G;GNo summary available.Worth knowing
- rs15869BRCA2 · 32,398,875A;Acommon in clinvarTypical
- rs11571836BRCA2 · 32,399,302A;Acommon in clinvarTypical
- rs211239KL · 33,022,051G;G1.7x risk for priapism in SCA patientsTypical
- rs2249358KL · 33,049,027A;Anormal risk for priapism in SCA patientsTypical
- rs9536314KL · 33,054,001G;G2 copies of KL-VS haplotype; one report links this to lower cognitive function with ageMinor
- rs9527025KL · 33,054,056C;GIntelligence; Ageing; LongevityTypical
- rs3752472KL · 33,055,256C;Ccommon in complete genomicsTypical
- rs648202KL · 33,061,326T;Tcommon in clinvarTypical
- rs9315204STARD13 · 33,119,700C;CNo summary available.Typical
- rs1777672NBEA · 35,603,682A;Acommon in complete genomicsTypical
- rs7328278DCLK1 · 35,777,629A;Acommon in complete genomicsTypical
- rs964609637,491,309A;ANo summary available.Typical
- rs9576827LOC105370170 · 39,506,244A;ANo summary available.Typical
- rs913246LINC00598 · 40,374,014T;Tcommon genotypeTypical
- rs2721051LOC100289058 · 40,536,747C;Ccommon on affy axiom dataTypical
- rs7329174ELF1 · 40,983,974A;Acommon in complete genomicsTypical
- rs9566845KIAA0564 · 41,761,944G;Gcommon in complete genomicsTypical
- rs9566867KIAA0564 · 41,854,763G;Gcommon in complete genomicsTypical
- rs1012053DGKH · 42,079,301C;C0.39x reduced risk of Bipolar Disorder.Worth knowing
- rs994856DGKH · 42,134,315A;Gcommon in complete genomicsTypical
- rs4142110DGKH · 42,180,386C;CnormalTypical
- rs17646069DGKH · 42,229,127T;Tcommon genotypeTypical
- rs952563842,554,441C;Cstronger bonesWorth knowing
- rs9594782TNFSF11 · 42,577,050T;TNo summary available.Typical
- rs2277439TNFSF11 · 42,581,307G;Gcommon in clinvarTypical
- rs12721445TNFSF11 · 42,606,745A;Acommon in complete genomicsTypical
- rs1054016TNFSF11 · 42,607,866G;Gcommon in clinvarTypical
- rs1706400242,996,665C;Ccommon genotypeTypical
- rs17538444ENOX1 · 43,260,134C;CNo summary available.Typical
- rs1706532344,053,652C;Ccommon in complete genomicsTypical
- rs956734944,063,269A;Acommon in complete genomicsTypical
- rs17065868TSC22D1 · 44,480,955T;TNormalTypical
- rs17648246LOC107984619 · 44,919,746A;Acommon genotypeTypical
- rs732375545,326,132G;Gcommon genotypeTypical
- rs912428LRCH1 · 46,593,768G;Gcommon in complete genomicsTypical
- rs6314HTR2A · 46,834,899G;Ghigher risk for RATypical
- rs7997012HTR2A · 46,837,850A;A~18% more likely to respond to citalopramTypical
- rs643627HTR2A · 46,854,476A;GNo summary available.Typical
- rs2224721HTR2A · 46,858,019G;Gcommon/normalTypical
- rs659734HTR2A · 46,861,148A;Acommon in complete genomicsTypical
- rs1328674HTR2A · 46,867,572T;Thigher risk for RATypical
- rs594242HTR2A · 46,883,917C;GNo summary available.Typical
- rs9534505HTR2A · 46,886,609G;Gcommon in complete genomicsTypical
- rs6313HTR2A · 46,895,805A;Adepression, panic, stress responseWorth knowing
- rs6311HTR2A · 46,897,343C;C3.6x increased risk of sexual dysfunction when taking SSRI Antidepressants.Important
- rs116855232NUDT15 · 48,045,719C;TMuch higher (>10x) risk for leukopenia if treated with thiopurinesVery important
- rs3092891RB1 · 48,379,594C;TRetinoblastoma (predicted)Very important
- rs2227311RB1 · 48,412,896A;ANo summary available.Typical
- rs2854344RB1 · 48,423,557A;ANo summary available.Typical
- rs4151580RB1 · 48,453,505G;Gcommon in complete genomicsTypical
- rs4151620RB1 · 48,474,923C;GNo summary available.Typical
- rs3092904RB1 · 48,477,345T;Tcommon in clinvarTypical
- rs2762051DLEU1 · 50,261,579C;CNo summary available.Typical
- rs12874278RPL34P26 · 50,361,786C;CNo summary available.Typical
- rs311660250,537,219T;Tcommon on affy axiom dataTypical
- rs123995450,545,001C;Ccommon genotypeTypical
- rs10492519FAM124A · 51,250,192G;GIncreased risk of developing prostate cancerWorth knowing
- rs76151636ATP7B · 51,944,145T;TWilson's disease; variable age of onsetVery important
- rs732774ATP7B · 51,949,672C;Ccommon in clinvarTypical
- rs1061472ATP7B · 51,950,352T;Tcommon in clinvarTypical
- rs137853280ATP7B · 51,965,034C;GUnaffected carrier of a Wilson disease mutationImportant
- rs9536062THSD1 · 52,397,583A;Gunaffected carrier of a non-immune hydrops fetalis mutationImportant
- rs73294952,943,749A;Acommon genotypeTypical
- rs1050757753,393,956T;Tcommon on affy axiom dataTypical
- rs79565954,179,837T;Tcommon in complete genomicsTypical
- rs1049260458,330,179C;CNo summary available.Typical
- rs7337573LINC01442 · 60,939,535T;Tcommon in complete genomicsTypical
- rs1707733165,782,209C;Ccommon in complete genomicsTypical
- rs17081231PCDH9 · 66,393,490A;Acommon in complete genomicsTypical
- rs193750667,461,239A;A1.6x riskTypical
- rs259352569,345,267A;Acommon genotypeTypical
- rs35223669,449,553T;Tcommon genotypeTypical
- rs11843309KLHL1 · 69,880,828C;Ccommon in complete genomicsTypical
- rs7984606KLHL1 · 69,881,529A;ANo summary available.Typical
- rs957242370,272,071G;Gcommon in complete genomicsTypical
- rs17089782PIBF1 · 72,835,359A;GCarrier of a Joubert syndrome 33 mutationImportant
- rs8002688PIBF1 · 72,985,844C;Ccommon genotypeTypical
- rs954332573,342,491C;C1.37x Slightly higher pancreatic cancer riskWorth knowing
- rs9318225KLF12 · 73,917,128T;Tcommon in complete genomicsTypical
- rs54809775,202,132T;Tcommon in complete genomicsTypical
- rs557337TBC1D4 · 75,286,865A;Acommon in clinvarTypical
- rs1062087TBC1D4 · 75,310,080C;Ccommon in clinvarTypical
- rs61736969TBC1D4 · 75,324,385G;Gcommon in clinvarTypical
- rs65962876,889,101G;Gcommon in complete genomicsTypical
- rs386833967CLN5 · 77,000,848-;AACACarrier of a mutation for neuronal ceroid-lipofuscinoses mutationImportant
- rs5352EDNRB · 77,901,095T;THirschsprung disease?Important
- rs5351EDNRB · 77,901,178T;Tcommon in clinvarTypical
- rs9574199RNF219-AS1 · 78,234,779C;Ccommon in complete genomicsTypical
- rs11838918LINC00331 · 78,836,439T;Tcommon in complete genomicsTypical
- rs1359790LOC105370275 · 80,143,021G;Gcommon in complete genomicsTypical
- rs2197609LINC00333 · 84,603,753T;Tcommon genotypeTypical
- rs732389388,052,451T;Tcommon in complete genomicsTypical
- rs732601889,713,668A;AnormalTypical
- rs132732889,750,579G;GnormalTypical
- rs1694414190,213,292G;Gcommon in complete genomicsTypical
- rs82819990,718,584C;Ccommon in complete genomicsTypical
- rs9589207MIR20A · 91,351,335A;ANo summary available.Typical
- rs553717GPC5 · 91,693,325C;Ccommon in complete genomicsTypical
- rs2352028GPC5 · 91,792,975C;TNo summary available.Worth knowing
- rs7985891GPC6 · 93,226,778A;Acommon genotypeTypical
- rs9561428GPC6 · 93,688,843G;Gcommon genotypeTypical
- rs727299DCT · 94,456,247C;Ccommon in complete genomicsTypical
- rs9561778ABCC4 · 95,061,461G;T~2x increased risk of adverse drug reactions from cyclophosphamide treatmentsMinor
- rs1751034ABCC4 · 95,062,722C;Ccommon in clinvarTypical
- rs16950650ABCC4 · 95,123,178C;CNo summary available.Typical
- rs3765534ABCC4 · 95,163,161C;Ccommon in complete genomicsTypical
- rs11568658ABCC4 · 95,210,754C;Ccommon in complete genomicsTypical
- rs2038823HS6ST3 · 96,299,179G;Gcommon on affy axiom dataTypical
- rs2770228LOC105370324 · 97,548,318A;Acommon genotypeTypical
- rs1695477698,048,363A;Acommon genotypeTypical
- rs2297322SLC15A1 · 98,723,927C;Ccommon in complete genomicsTypical
- rs8187817SLC15A1 · 98,726,388A;Acommon in complete genomicsTypical
- rs9582259SLC15A1 · 98,733,736T;TNo summary available.Typical
- rs3825427UBAC2-AS1 · 99,196,717C;Ccommon in complete genomicsTypical
- rs9517668UBAC2 · 99,271,586A;Acommon in complete genomicsTypical
- rs9517701UBAC2 · 99,377,286A;Acommon in complete genomicsTypical
- rs733504699,389,484C;Ccommon in complete genomicsTypical
- rs9513851NALCN · 101,095,633G;Gcommon in clinvarTypical
- rs9518307NALCN · 101,101,810T;TNo summary available.Typical
- rs7996217NALCN · 101,348,594T;Tcommon in complete genomicsTypical
- rs751402BIVM-ERCC5 · 102,845,848A;Acommon in clinvarTypical
- rs2296147BIVM-ERCC5 · 102,846,025T;Tcommon in clinvarTypical
- rs1047768BIVM-ERCC5 · 102,852,167T;Tcommon in clinvarTypical
- rs9514067ERCC5 · 102,875,580C;Ccommon in complete genomicsTypical
- rs17655ERCC5 · 102,875,652G;Gcommon in clinvarTypical
- rs873601ERCC5 · 102,875,987G;Gcommon in clinvarTypical
- rs912969103,214,754C;Ccommon in complete genomicsTypical
- rs1529276103,275,657T;Tcommon on affy axiom dataTypical
- rs9586179103,407,737T;Tcommon in complete genomicsTypical
- rs16962638103,534,569A;Acommon in complete genomicsTypical
- rs16965962105,154,672C;Ccommon genotypeTypical
- rs2391191DAOA · 105,467,097G;Gcommon in clinvarTypical
- rs2052383105,547,179T;Tcommon in complete genomicsTypical
- rs1372791106,132,916C;CNo summary available.Typical
- rs10492664108,163,877C;Ccommon in complete genomicsTypical
- rs10131LIG4 · 108,207,498T;TNo summary available.Typical
- rs1805386LIG4 · 108,209,565A;Acommon in clinvarTypical
- rs1805388LIG4 · 108,211,243T;Treduced risk of multiple myelomaWorth knowing
- rs1805389LIG4 · 108,211,261G;Gcommon in clinvarTypical
- rs2289046IRS2 · 109,755,559C;Tcommon in complete genomicsTypical
- rs12584136IRS2 · 109,767,007C;Ccommon in complete genomicsTypical
- rs641862LOC101927712 · 110,137,885T;Tcommon genotypeTypical
- rs3742207COL4A1 · 110,166,251T;Tcommon in clinvarTypical
- rs494558COL4A1 · 110,276,815T;Tcommon genotypeTypical
- rs7338333ING1 · 110,715,817G;Gcommon in complete genomicsTypical
- rs767210LOC105370362 · 110,817,691G;Gcommon in complete genomicsTypical
- rs7333181111,568,950G;Gcommon on affy axiom dataTypical
- rs753180111,963,048A;GIncreased risk of acne occurences in Chinese Han populationTypical
- rs7998202C13orf35 · 112,677,554A;Acommon in complete genomicsTypical
- rs11842874MCF2L · 113,040,195A;Acommon but +17% risk OsteoarthritisMinor
- rs6041F7 · 113,118,393G;Gcommon in clinvarTypical
- rs6046F7 · 113,118,845A;Abetter blood pressure, lower risk of myocardial infarctionWorth knowing
- rs3211719F10 · 113,123,195A;Acommon/normalTypical
- rs5962F10 · 113,140,947C;Ccommon in complete genomicsTypical
- rs3024778PROZ · 113,160,151G;Gcommon in complete genomicsTypical
- rs3024772PROZ · 113,171,786G;Gcommon in complete genomicsTypical
No matches.
Source and license
Adapted from SNPedia, using a snapshot taken October 16, 2026. SNPedia content is shared under CC BY-NC-SA 3.0 US, and this page is shared under the same license.
SNPedia is a community-edited wiki. Its entries can be incomplete, out of date or wrong, and nothing here is a diagnosis or medical advice. Magnitude is a community rating of how interesting a genotype is, not a risk score.